Dipodomys spectabilis (banner-tailed kangaroo rat): 122112537
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Entry
122112537 CDS
T07891
Symbol
Pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122112537 (Pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122112537 (Pan3)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122112537 (Pan3)
mRNA degradation factors
3'-5' decay
Pan complex
122112537 (Pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
Pkinase
zf-CCCH_4
Torus
Motif
Other DBs
NCBI-GeneID:
122112537
NCBI-ProteinID:
XP_042541293
LinkDB
All DBs
Position
Unknown
AA seq
892 aa
AA seq
DB search
MNSGGGLPPPSAAASSPSSSLAAAAAPPGVGGVPGGPAAAAAAAAAGVKLKYCRYYAKDK
TCFYGEECQFLHEDPAAGAAPGLSLHSNSVPLALAGAPGAGFPPGAVPGGGAGPPPGPKK
PDLGAPGAAAAAGVGGGSSGGLDGPRLAIPGMDGGALTDTSLTDSYFSTSFIGMNGFGSP
VETKYPLIQRMTNSSSSPSLLNDSAKPYAGHDPLTSSASSLFNDFGALNISQRRKPRKYR
LGMLEERLVPMGSKARKAKNPIGCLADRCKSGVPINMVWWNRVTENNLQTPNPTASEFIP
KGGSTSRLSNVSQSNMSAFSQVFSHPSMGSPATAGLAPGMSLSAGSSPLHSPKITPHTSP
APRRRSHTPNPASYMVPSSASTPVNNPVSQNPSSGQVIQKETVGGTTYFYTDTTPAPLTG
MVFPNYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPAVPTE
VDSYHSLFPLEPLPPPNRIQKSSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMV
LVDMWKKIQHSNIVTLREVFTTKAFSEPSLVFAYDFHAGGETMMSRHFNDPNADAYFTKR
KWGQHDGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILITGKTRLR
VNCVGVFDVLTFDNSQNNNPLALMAQYQQADLISLGKVVLALACNSLAGIQRENLQKAME
LVTINYSSDLKNLILYLLTDQNRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEV
QNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHI
ISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGQL
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggcggcggcctcccgcccccctcggccgccgcctcctctccctcgtcctcg
ctggcggcggcggcggccccgccgggggtcgggggtgtccccggcgggccggcggcggcg
gcggcggcggcggcggcgggagtgaagctgaagtactgccgctactacgccaaggacaag
acttgcttctacggggaggagtgtcagttcctgcatgaggacccggccgccggggccgcc
ccgggcctcagcctccatagcaacagcgtccccctggctctggccggggcgccgggggcc
ggcttcccgccgggagccgtgccaggagggggagccggaccgcccccgggacccaagaag
ccggacctgggggctccgggggcggccgccgcggccggcgttggaggaggcagcagcggg
ggactcgatggaccgcggctagccattcctggaatggatggaggtgctttaactgataca
agtctcacagattcctatttcagtaccagctttattggaatgaatggatttggaagccct
gtggaaacaaaatatcccttaatacagagaatgactaatagtagcagctccccaagcctt
ctaaatgacagtgccaagccatatgcaggccatgatcctctaacttcatctgcttcatcc
ttgtttaatgactttggtgccctcaacatctctcagagaagaaagccaaggaagtatcgc
ctggggatgctggaggagaggctagttccgatgggatcaaaggcacggaaagcaaagaac
cctattggctgccttgctgacaggtgtaaatcaggagtacccatcaatatggtttggtgg
aacagagtcacagaaaacaatttacagacaccaaatcctactgcaagcgagtttattcct
aaaggaggatcaacctccaggctgagtaacgtgtcccagtcaaatatgtctgccttctct
caagttttctctcacccatccatgggaagccctgctactgctggattagcaccaggaatg
tcattgtctgctggatcttcccctctccattcccccaagattactccacatacttctcct
gctcccagaagaagaagccacactccaaatccagcaagttacatggtgccttctagtgcc
tctacacctgttaataatcctgtttctcagaacccatcttctggtcaggtgatccagaag
gaaactgtcggtggaactacttacttctataccgacacaactccagcacctttgactgga
atggtatttccaaactatcatatttatcctccaactgcacctcatgttgcgtatatgcaa
cccaaagcaaatgcaccttcattcttcatggccgatgaactccgacaggagctgatcaac
agacatttaataacaatggctcaaattgatcaagcagatatgccagcagtccctacagag
gttgacagctaccacagcctattccctctagaaccactgccacccccaaaccggatacaa
aaatcaagtaattttggatatattacatcttgctacaaagctgtaaatagcaaagatgat
ctgccatattgccttcggaggatacatggttttcgtcttgttaacacaaagtgtatggta
ttggttgatatgtggaaaaaaatccaacactcaaatattgtaacccttcgtgaagtattt
accactaaagcattttccgagccttctcttgtgtttgcctatgatttccatgctggagga
gaaactatgatgagcagacactttaatgaccctaatgctgatgcctatttcacaaagaga
aagtggggtcaacatgacggaccattgcccagacagcatgctggattattgccagaatct
ctcatttgggcatatattgtccaattgagttctgctttgcgtaccattcacacagcaggc
ctagcatgtcgagtaatggacccaacaaaaattctgattactggcaaaacaaggttgcga
gtaaattgtgttggagtttttgatgttttaacctttgataacagtcaaaacaataatcca
ttggcattaatggctcagtaccagcaagctgatctgatatcattaggaaaagttgtgttg
gctttggcttgcaactctttggcaggaattcagcgagagaatttacagaaggccatggaa
ttggtgacaatcaactactcttctgacctgaagaatctgatcttgtatttgttgactgac
caaaataggatgcgaagtgtaaatgatatcatgcccatgattggtgctcgattttatact
caattggacgctgctcaaatgagaaatgatgtcattgaggaagatctagcaaaggaggtt
cagaatggaagactgtttaggctcctggcaaaattgggaacaatcaatgagaggccggag
tttcagaaggatccaacctggtcagagactggagatcgttatctattgaaactctttagg
gatcatctttttcatcaggtcacggaagcgggtgctccctggattgatctcagtcatata
atttcttgtcttaacaagttagatgctggtgtgccagaaaaaataagcctgatttccaga
gatgagaagagtgtactggtggtgacatacagtgacttaaagcgctgttttgaaaatact
tttcaggaactgattgcagctgcaaatggtcagttgtag
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