Dipodomys spectabilis (banner-tailed kangaroo rat): 122113748
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Entry
122113748 CDS
T07891
Symbol
Shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dsp04121
]
122113748 (Shprh)
Enzymes [BR:
dsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122113748 (Shprh)
Ubiquitin system [BR:
dsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122113748 (Shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
PHD
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
LMBR1
PEP-utilisers_N
TPR_12
CEP76_N
Motif
Other DBs
NCBI-GeneID:
122113748
NCBI-ProteinID:
XP_042542797
LinkDB
All DBs
Position
Unknown
AA seq
1679 aa
AA seq
DB search
MSSRRKRAPPVKVDEERQQQLRWNMLEDRRNEPLTDDEQPCLAADSSPALSISLDDSPLE
ETAHREKRRCSEVVSSVSTEKEEIVDTVSSLSVKLNIVISPYHCDNSWKALLGELTLQLL
PGHSLMENFSGRSFTLMSSESVNQFLIYVHSECEDVEKQEKELKESINFCDKGIPVESSL
SSEMLEDLGWLQKKRRIKLYQTPEGNHMIKIGIYIMEAGLAKLDFFSDANSRMKKFNQLM
KRVMEKLYHFIIPDTLEDEEDEESEPEGQDIDELYHFVKQTHKQETQPIQMDVQHPALTP
VLRPYQRDAVNWMLQREHLANTPAGENSLHFLWREIVTSEGLKLYYNPYTGCIIREYPHS
GPHLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSNCFGGKAK
ETKMRNVEFEPKEKVHCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSMYRYDVQRNRSL
LKRMLKCLILEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQVVGSPRRIQKDSRKLG
NKDTDSEYLPSNTSDDDDDPYCYYYKARRNRSKPRKKLLTNKGKSQLVTSPDSQGHCPAT
NDSGIADVTMSESTCVPDVKQEQESKDHAQPLNAAGNEVPHSPPETPFNAPDYRFECICG
EVGIDPKPRVQCLKCHLWQHAKCVNYEEKNLKIKPFYCPHCLVAMEPVSTRATLIISPSS
ICHQWVDEINRHVKSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELNYVDIP
HSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLTGINRWC
ISGTPVQRGLEDLFGLVVFLGIEPYCIRHWWVRLLYRPYCKRNPQLLYSFIAKILWRSAK
KDVIDQIQIPPQTEETHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRR
TVTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVC
ALNGLAGIHIIKGEHTLAAELYREVLRSSEEHKEKLKTDSLQRLHATHNLMELLMAKHPG
IPPTLRDGRLEEEAKQLREHYMTKCNTEVAEAQQALQPVQQTIRELQRKIRSNSPWWLNV
IHRATEFSLDEELVQRVRNEITSNYKQQTDKLSMSEKFRDCRGLQFLLATQMEELNKFQK
LVREAVKNLEKPPSRDVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLFANTVKGQ
TAIFEEMIEDEEGLVDDRAPTTTRGLWAVSETERSMKAILSFARSHRFDVEFVDEGSAAM
DLFEAWKKEYKLLHEYWMTLRNRVSAVDELAMATERLRVRHPKEPKPNPPVHHIIEPYEV
EQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAV
LSCGHCFCNECTSIIIEQYSVGSHKSSIKCAICRQTTSHKEVSYVFTSERASQEEDIPVK
GSHSTKVEAVIRTLMKIKLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIGRVKTFQ
ENLSAFKYDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTK
PTIVHRFLIKATIEERMQTMLKTAERSSHTNSSGKHSEASVLTVADLADLFSRDSEELE
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgacggaaacgtgctcctcctgtgaaggtagatgaagagaggcagcaacaa
cttcgttggaacatgcttgaggaccgaaggaatgaaccactcactgacgatgagcagcct
tgcctagctgctgactcctctcctgccctgagcatcagcctagatgacagtcccttggaa
gaaacagctcacagagagaagaggagatgttcagaggtggtgagctcagtatcaactgag
aaagaagaaattgttgatactgtttcttccttgtctgtaaaattgaatattgtaatttct
ccttatcactgcgataattcttggaaggcccttttgggagaattaactcttcagcttctt
cctggacatagtttaatggaaaatttttccggaaggagtttcacattgatgagttctgag
tcagtcaatcaattcctgatttatgttcattcagaatgtgaagatgtagagaagcaagaa
aaggaacttaaagaatcaatcaatttttgtgacaagggaattccagtggaatcatccctt
agtagtgagatgttagaagatttaggatggctgcaaaagaagagaagaataaaactttac
caaacaccggaaggaaatcacatgatcaagattggaatttacatcatggaagctggtcta
gcaaaattagattttttcagtgatgcaaattcacgaatgaaaaagttcaatcaactcatg
aaaagagtgatggaaaagttatatcattttattatcccagatacactagaagatgaggaa
gatgaagagagtgaaccagagggacaagatattgatgaactctatcattttgtgaagcaa
acacataaacaagagacacaacctatccaaatggatgtccagcatcctgcattgacccct
gttttgagaccctaccagagagatgctgtcaactggatgcttcagcgagagcacctcgca
aacacacctgctggtgaaaattccctgcactttttatggcgagaaattgttacatctgag
gggctgaaactctactataatccatatacaggctgcatcatccgtgaatacccacattcc
ggaccccacttgcttggtgggatcttagcagatgaaatgggtcttggaaagacagtggag
gttttggctctgattctaacacatactcgacaagatgtcaaacaagatgctctcactctt
cctgaggggaaagtggtgaattatttcatcccatcaaattgttttggaggaaaagcaaaa
gagacaaaaatgcggaatgtagaatttgaacctaaggaaaaagttcattgccctccaaca
cgtgtgatgatcctgacagctgtgaaagaaatgaatggaaaaaaaggagtttctatcctt
tccatctacaagtatgtcagttctatgtatagatacgatgtgcagcggaacagaagtctt
ctcaagcggatgctgaaatgtttaattctcgaaggtctagtgaaacagatcaaaggccac
ggtttctctgggacttttacattggggaagaactataaggaagaggatatatgtgataaa
acgaaaaagcaggtagtaggaagcccaaggagaattcagaaagattccagaaaattaggg
aacaaggacacagattctgaatacttgccctcaaacacttcggatgatgatgatgatcct
tactgctattactataaggccaggagaaaccgtagtaaaccaaggaaaaagctattaaca
aacaaaggaaaaagtcagcttgttaccagtcctgattcacaaggtcactgtccagctaca
aatgactctgggattgctgatgttactatgtctgagagtacatgtgtacctgacgttaaa
caagagcaggaatcaaaggaccatgctcagcctctgaacgctgctggtaatgaggtacca
cattctcctcctgagactcccttcaatgcccctgactatcgctttgagtgcatatgtggt
gaagttgggatagaccctaagcctcgggttcagtgcctgaaatgccatctgtggcaacat
gccaagtgtgtgaactatgaagagaagaatctgaagattaaacctttctactgcccccac
tgccttgttgcaatggagccggtgtcaacaagagccactctgatcatctctccaagttcc
atctgtcaccagtgggtggatgagatcaacaggcacgtcaagtcctcatctcttcgagtc
ttggtatatcaaggagtgaagaaagatggcttcttacagcctcattttttggcagaacag
gacatagttatcattacctatgatgtcctccgttccgaactgaactatgtcgatatccca
catagcaatagtgaggatgggcgtcgtctgcggaaccagaagcgctatatggccattccc
agccctctagttgctgtggaatggtggaggatctgccttgatgaagctcagatggttgag
tgtccaacagtgaaggctgcagaaatggctcagcgactgactgggattaatcggtggtgc
atcagtggcactccagtacagcgaggactggaggatctttttggccttgtggtgtttctt
ggcattgaaccttactgtattagacattggtgggttcgacttctctatcgcccttactgc
aagaggaaccctcagctcctgtacagttttattgccaagatactgtggaggtctgcaaag
aaagatgtgattgaccaaatccagataccacctcagactgaagaaacccactggctccac
ttttctccagtggagagacatttctatcaccgtcagcacgaggtctgctgccaggatgca
gtggtgaagctcaggaagatttctgactgggctctgaagctcagtagcctggaccgaagg
accgtcacctccatcctttatccactgctgaggcttaggcaggcctgttgccacccacag
gctgttcgcggggagttcttgccactccagaagagcactatgacaatggaggaactgctg
acatctttgcagaagaaatgtggaactgaatgtgaagaagcacatcgacaactggtgtgt
gccctcaatggcttagcgggcatccacatcattaaaggtgagcacaccttagcggcagag
ctatacagggaagtactgcgctcatctgaggagcacaaggagaaactcaaaactgattca
cttcagagacttcatgctacacataacttgatggaactgttaatggccaaacacccaggg
atacctcctaccttacgagatggcaggcttgaggaagaggccaaacagcttcgagagcac
tacatgaccaagtgcaatacagaagttgccgaagcccagcaagccttacagcctgtgcag
cagaccatccgggagctccaaagaaagattcgttctaattctccctggtggctgaatgta
atccacagagcaacagaattttccctggatgaagaacttgtacaacgagtgcgtaatgaa
ataaccagcaactacaaacagcaaactgacaagctttctatgtcagaaaagttccgagac
tgcagaggtcttcagttcctacttgcaacacaaatggaagagctaaataaattccagaag
cttgtaagggaagctgtaaaaaacctagagaaacctccgtctcgtgatgttattgagtct
gcaacagtctgccacctgcgaccagccagacttcctctcaactgctgtgtcttttgcaaa
gcagatgaattgttcacagagtatgaatcaaagctatttgctaacacggtcaaaggtcag
actgccatattcgaggaaatgatagaagatgaagaaggactagtagatgatcgagcccct
actaccacacggggcctgtgggctgttagtgagacagagcgttccatgaaagcaatactg
tcatttgcaagatcccacaggtttgatgttgaattcgttgatgaaggaagtgctgcaatg
gatctgtttgaagcatggaagaaggaatataagttgcttcatgaatattggatgacacta
aggaaccgggtatctgctgttgatgaacttgcaatggctacagaacgactgagagtgcgg
catcccaaggagccaaagccaaatccacccgttcatcacatcattgaaccctatgaggtg
gagcaaaatcgtataaaactattaaatgataaagctgttgctacatcacagcttcagaaa
aaacttggacagcttctttatctaactaatttggagaagtctcaagacaaaacgtcagga
ggtattaatccagaaccatgcccaatatgtgctcgacagctgggaaagcagtgggcagtg
ctgagctgtggacactgcttctgtaatgaatgcacctctatcattattgagcagtacagc
gtggggtctcacaaaagctccatcaagtgtgccatctgccgccagaccacatcgcacaaa
gaggtctcctacgtcttcacctcagagagagcaagccaggaggaggacatcccagtgaag
ggcagccattctaccaaagtagaagcagtgatccgaactctgatgaaaataaagctccga
gacccaggagccaaagcacttgttttctcaacgtggcaggatgtgttagatattatctca
aaagctctcacggacaacaacatggaatttgcacagattggccgggttaagacatttcag
gagaacctgtcagcatttaaatatgatccccaaatcaatattttgctgctgcccctgcat
acaggttctaatggattaactatcattgaagcaactcacgttctcctggtggagcccata
ctgaaccctgcccatgagcttcaggccattggaagggtccaccggattggacagaccaaa
cctacaattgtacacagattcttaattaaagccacaatagaagagcgaatgcagacaatg
ctgaaaacggcagagaggagcagtcacactaactcatcagggaagcattctgaggcctct
gtgctgactgtggccgatctggcagacctgttttccagagactccgaagagcttgagtga
DBGET
integrated database retrieval system
