Dipodomys spectabilis (banner-tailed kangaroo rat): 122113824
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Entry
122113824 CDS
T07891
Symbol
Ptch1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04024
cAMP signaling pathway
dsp04340
Hedgehog signaling pathway
dsp04360
Axon guidance
dsp05200
Pathways in cancer
dsp05205
Proteoglycans in cancer
dsp05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
122113824 (Ptch1)
04024 cAMP signaling pathway
122113824 (Ptch1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
122113824 (Ptch1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122113824 (Ptch1)
05205 Proteoglycans in cancer
122113824 (Ptch1)
09162 Cancer: specific types
05217 Basal cell carcinoma
122113824 (Ptch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MENTAL
Motif
Other DBs
NCBI-GeneID:
122113824
NCBI-ProteinID:
XP_042542875
LinkDB
All DBs
Position
Unknown
AA seq
1451 aa
AA seq
DB search
MASAGNAAEPQDRGGGGGGGCSGALGRPAGGGRRRRTGGLRRAALDRDYLHRPSYCDAAF
ALEQISKGKATGRKAPLWLRAQFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAAN
LETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALLQHLD
SALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAK
LQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPA
DPDCPATAPNKNSTRPLDMALVLNGGCHGLSKKYMHWQEELIVGGTVKNSTGQLVSAHAL
QTMFQLMTPKQMYEHFKGYDYVSHINWNENKAAAILEAWQRTYVEVVHQSVAQNSTQKVL
SFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALS
VAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGEC
LKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDL
YRREDRRLDIFCCFTSPCVSRVIQVEPQAYTEPHSNTRYSPPPPYSSHSFAHETHITMQS
TVQLRTEYDPHTHVYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSL
HCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVILLFLGLLGVSLYGTTRVRDGLDLTDI
VPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQL
PKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDIS
QLTKQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETR
LRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQ
YISLRHWLLLAISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSA
VPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLML
AGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNQLPTPSPEP
PPSVVRFAVPPGHTNNGSDSSDSEYSSQTTVSGISEELQHYEAQQGMGGPAHQVIVEATE
NPVFARSTVVHPEPRHHPPSSNPRQQPHLDSGSLPPGRQGQQPRRDTSREGLRPPPYRPR
RDAFEISTEGHSGPSNRDRSGPRGARSHNPRNPASTAMGSSVPSYCQPITTVTASASVTV
AVHPPPISGPGRNPRGGLCPGYEDYPDTDPGLFEDPHVPFHVRCERRDSKVEVIELQDVE
CEDGRWGGSSN
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctggtaacgccgccgagccccaggaccgcggcggcggcggcggcggcggc
tgcagcggggccctgggccggccggccggtggcgggaggcgcagacggaccggaggactg
cgccgtgccgcactggatcgggactatctgcaccggcccagctactgcgacgccgccttc
gctctggagcagatttccaaggggaaggctactggccggaaagcgccactgtggctgaga
gcgcagtttcagagactcttatttaaactgggttgttacattcaaaaaaactgcggcaag
ttcttggttgtgggcctcctcatatttggagccttcgctgtgggattaaaggcagctaat
ctcgagaccaacgtggaggagctgtgggtggaagttggtggacgagtaagtcgtgaatta
aattatactcgccagaagattggagaagaggctatgttcaatcctcaactcatgatacag
accccaaaagaagaaggtgctaatgtcctgaccacagaagccctcctacaacacctggac
tcagcactccaggccagccgagtccacgtatatatgtacaacaggcaatggaaattggaa
catttgtgctacaaatcaggagaacttatcacggaaacaggttacatggatcagataata
gaatacctttacccttgtttaattattacacctttggactgcttctgggaaggggcaaaa
ttacagtctgggacagcatacctcctaggtaaacctcctttgcggtggaccaactttgac
cctttggaattcctagaagagttaaagaaaataaactatcaagtggacagttgggaggaa
atgctgaataaggctgaagttggccatgggtatatggaccgtccctgcctcaatccagcc
gatcccgattgccccgccacagcccctaacaaaaattcaaccagacctcttgatatggcc
cttgttttgaatggtggatgtcatggattatccaaaaagtatatgcactggcaggaggag
ctgattgtgggtggtacagtcaagaacagcactggacagcttgtcagcgcccacgccctg
cagaccatgttccagttaatgactcccaagcaaatgtacgagcacttcaagggctacgac
tatgtctcacacatcaattggaacgagaacaaagcagcagctatcctagaagcttggcag
aggacatacgtagaggttgttcatcaaagtgttgcccagaactccactcaaaaggtgctt
tccttcaccactacaaccttggacgacattctaaaatccttctctgatgtcagcgtcatc
cgagtggccagtggctacttactgatgcttgcctatgcctgtttaaccatgctgcgctgg
gactgctccaagtcccagggtgccgtggggctggctggcgtcctgttggttgcactgtca
gtggctgcaggattgggcctgtgctcattgatcgggatttcctttaacgctgcaacaact
caggttttgccatttcttgctcttggtgttggtgtggatgatgtttttctcttggcacat
gcatttagtgaaacaggacaaaataaaaggatcccgtttgaggacaggaccggggagtgc
ctcaagcgcacaggagccagtgtggccctcacttccatcagcaatgtcactgccttcttt
atggctgcgttaatcccaattcctgctctgcgagcattctctctccaggctgcggtggtg
gtggtgtttaattttgccatggtgctgctcatttttcctgcaattctaagtatggattta
tatcgacgtgaggacaggagattggatattttctgctgctttacaagcccctgtgtcagc
agagtgattcaggttgaacctcaggcctacacggagcctcacagtaacacccgctacagt
cccccaccgccctacagcagccacagcttcgcccatgaaacacacatcaccatgcagtcc
actgtccagcttcgcacagagtacgaccctcacacgcatgtgtactataccactgccgag
ccgcgctctgagatatctgtacagcccgtcactgtcacccaggacaccctcagctgccag
agccccgagagtaccagctccaccagggacctgctctcccagttctccgactccagcctc
cactgccttgagcccccctgcaccaagtggactctctcgtcctttgcagagaagcactat
gctccattcctcttgaaaccaaaggccaaggtagtggtgatcctgctcttcctgggcttg
ctaggtgtcagcctttatgggaccactcgagtgagagacgggctggacctgacagacatt
gtccctcgggaaaccagagaatatgactttattgctgcacagttcaaatacttttctttc
tacaacatgtatatagtcacccagaaagcagactatcctaatatccagcacttactttac
gatcttcacaagagtttcagtaatgtgaagtatgtcatgttggaggaaaacaaacaactt
cctaaaatgtggctacactacttcagagactggctccaaggacttcaggatgcatttgac
agtgactgggaaactgggaaaatcatgccaaacaattacaaaaatggatcagatgatgga
gtcctggcctacaaactcctggtacaaaccggcagccgagataagcccatcgatatcagt
cagttgactaaacagcgtctggtggatgcagatggtatcattaatcccagtgctttctac
atctacctgacggcttgggtcagcaatgaccctgttgcttacgctgcctcccaggccaac
atccggccccatcgacctgaatgggtccacgacaaagctgactatatgccagaaacaagg
ttaagaatccctgcagcagaaccaatcgaatatgctcagttccctttctacctcaacggc
ctgcgagacacttcagactttgtggaagccattgaaaaagtaagaaccatctgcaacaac
tacacaagcctggggctctccagctaccccaacggctaccccttcctcttctgggagcag
tacatcagcctgcgccactggctgctgctggccatcagtgtggtcctggcctgcacgttc
ctcgtgtgcgccgtcttcctgctgaacccctggacggccggaatcattgtgatggtcctg
gcattgatgacagttgagctcttcggcatgatgggcctcattggaatcaagcttagcgct
gtgcctgtggtcatcctgatcgcatctgttggcatcggagtagaatttaccgttcatgtg
gctttggcctttctgacagccattggtgacaagaatcgcagggctgtgcttgccctggaa
cacatgtttgcccctgtcttggatggtgccgtgtccactctgcttggagtactgatgctt
gcagggtctgagtttgatttcattgtcaggtatttctttgctgtcctggcaatcctaaca
atcctgggtgttctcaatggactggttttgcttcctgtccttttatctttctttggacca
tatcctgaggtgtctccagccaatggcctgaaccagctacctactccttcccctgagccg
ccccctagtgttgttcgttttgcggttcccccgggtcacacaaacaatgggtcagattcc
tctgactcggagtacagttctcagacaacagtgtccggcatcagtgaagagcttcaacac
tatgaggcacagcagggcatggggggtcctgcccaccaagtgatcgtggaagccacagaa
aaccctgtcttcgcccgttccactgtggtccatcctgaaccaaggcatcacccaccctcc
tcaaaccctcgacagcagccccacctggactcagggtccctaccccctgggcgacaaggc
cagcagccccgcagggacacctccagagaaggcttgcggccacccccctacagaccacgc
agagacgcttttgaaatttctactgaagggcattctggccctagcaacagggaccgctcg
ggcccccggggagcccgttcccacaaccctcggaacccagcgtccactgccatgggcagc
tctgtgcccagctactgccagcccatcaccactgtgacagcttccgcttctgtcactgtt
gctgtgcaccccccacccatttctggaccaggacggaacccccgaggggggctctgcccg
ggctatgaagactaccctgatactgaccctgggctgttcgaggacccccacgtgcctttt
cacgtccgatgcgagaggagggactcgaaggtggaagtcatagagctgcaggatgtggag
tgtgaggacgggcgctggggaggcagctccaactga
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