KEGG   Dipodomys spectabilis (banner-tailed kangaroo rat): 122114132
Entry
122114132         CDS       T07891                                 
Symbol
Cdc40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
  KO
K12816  pre-mRNA-processing factor 17
Organism
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122114132 (Cdc40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dsp03041]
    122114132 (Cdc40)
Spliceosome [BR:dsp03041]
 Complex C
  Other components
   Step II factors
    122114132 (Cdc40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WDR55 EIF3I WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_NWD2_C WD_LRWD1 WDR54 Beta-prop_Vps41
Other DBs
NCBI-GeneID: 122114132
NCBI-ProteinID: XP_042543103
LinkDB
Position
Unknown
AA seq 579 aa
MSAAIAALAASYGSGSGSESDSDSEGGRCPLPAADSLMHLTKSPSAKPSLAVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEDEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSSVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgtcggctgccatcgcagctttagccgcttcctatggttcgggctcggggtctgaatcg
gactcggacagtgagggtggtcggtgtccgttgccagccgccgactccctcatgcatctg
actaaatctccctcggccaagccctcgctggcagtggcggtggactcggctccggaggtg
gccgttaaggaagatttggagactggagttcaccttgaccctgccgtgaaagaagttcaa
tacaatcctacctatgagaccatgtttgctcctgagtttggaccagaaaatccctttagg
acacagcaaatggctgcccctagaaatatgctatctggatatgctgaaccagctcatatc
aatgatttcatgttcgaacagcaaagaagaacttttgctacgtatggttatgcattagac
ccttcattagataatcaccaagtatctgctaaatacattggctctgtagaagaggctgaa
aaaaatcaaggtttaactgtctttgaaactggccagaagaaaacagaaaagaggaaaaag
ttcaaagaaaatgatgcatctaatattgatggtttcttgggaccatgggcaaaatatgtg
gatgaaaaagatgtagctaaaccttcagaagaagaacaaaaagaattggatgaaattaca
gcaaagaggcagaaaaaaggcaaacaggaagatgagaaacctggggaggagaaaacaatc
ctacatgttaaagaaatgtatgactatcaaggcaggtcctaccttcacatacctcaagat
gttggtgttaacctgaggtcatctgtaccacctgaaaagtgttaccttcccaaaaaacaa
attcatgtgtggtctggacacacaaagggagtcagtgcagtcagattgtttcctctctct
ggccatttattgctgtcttgttccatggactgtaaaattaagctatgggaagtttatgga
gaccggcgctgtctgcgaacatttattggtcacagcaaagctgttagagacatctgcttc
aacactgcaggaacacagtttcttagtgcagcctatgacagatatcttaaactctgggac
acagagacaggacaatgtatatcaaggtttacaaaccgaaaagtgccctattgtgtcaaa
ttcaatcctgatgaagataagcaaaatctctttgtggctgggatgtctgataaaaagatt
gtacaatgggacattagaagtggagaaattgtccaggaatatgatcggcatttgggtgct
gtcaacaccattgtttttgtggacgagaataggagatttgtgagcacatctgatgataag
agccttagagtttgggagtgggatatccctgtggatttcaaatacatagcagaacctagc
atgcattccatgcctgcagtgactttgtctccaaatggaaaatggttagcatgccaatca
atggacaaccagatcttaatttttggagcacagaacagattcaggttaaataagaaaaaa
atttttaagggccatatggttgcaggctatgcttgtcaggtagacttttcaccagatatg
agctatgtgatttcaggagacggaaatggaaaattaaatatctgggactggaaaaccaca
aaactgtacagtcggtttaaagctcatgataaggtgtgcataggtgcagtgtggcatcca
catgaaacttccaaggtcatcacatgcgggtgggatggtctcatcaaactgtgggattaa

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