Dipodomys spectabilis (banner-tailed kangaroo rat): 122114222
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Entry
122114222 CDS
T07891
Symbol
Scaf4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsp03021
]
122114222 (Scaf4)
03041 Spliceosome [BR:
dsp03041
]
122114222 (Scaf4)
Transcription machinery [BR:
dsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122114222 (Scaf4)
Spliceosome [BR:
dsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
122114222 (Scaf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122114222
NCBI-ProteinID:
XP_042543157
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPLTVKVSSEPPQATPNSIPAVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDTAGITPVVPAVAVPPAPTVA
APAAAVAAAAAVAAATAPAPPSATPAATSPPPQAPFGFPADGMQQPAYAQHQNMEQFQTR
MMGMQQDPMHHQVPLPPNGQMPGFGLLPAPPFPPMAPPVIPPTPPVQQSFQPSFQAQNEP
LAQKPHPQEMEVEQPCIPEVKRHMPDNRKSRSRSASRSPKRRRSRSSSRSRRSRHRRSRS
RSRDRRRHSPRSRSQERRDREKERERRQKGLPHIKSETASVCSTTLWVGQLDKRTTQQDV
ASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKG
IKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKPENEVAQN
GGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQAGPPVVGALQPPTFTPPM
GIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIP
NSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQ
PVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPH
MMPRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPP
QQQQQQQQQQPPPQPQPQQPPPSQQPPSAQQQPQQFRNENRQQFNSGRDQERFGRRSFGN
RVENDRERYGSRNDDRDSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRES
RREKDENRGKEKSEVTNRAGGKAIEPPPSQVGTVDTVSELDKGEAKATVVKPSEEAPAEA
TSSVEPEKDSSSATETTR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgcctttaaccaggagctcttttcacttatggatatgaaacctcct
atttctagagcaaagatgattctcattactaaagctgctattaaagctattaagctttat
aagcatgttgttcaaatagtagaaaaattcatcaaaaagtgtaaaccagaatataaggtt
ccaggattatatgtaattgattcaattgtgcgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattttctaaaaatataactgctacattccaatatttatat
ctttgtccatctgaagataagagtaaaatagtccgtgtgctaaatctttggcaaaaaaat
ggagtgttcaaaattgaaattatccagcctctcttggacatggcagcaggaaccagtaat
gcagccccagtagcagaaaatgttaccaataatgaaggctcacctccacttacagtaaaa
gtttcctctgaacctccacaagctactccaaactctatacctgctgtaccacagttgcct
agttctgatgcttttgctgctgtggctcaactttttcagacaactcaaggccaacagctt
cagcagatccttcagacttttcagcaaccaccaaaaccacagtctcctgctcttgacaat
gctgtgatggctcaggttcaggctatcacggctcagttaaagacagctcctacacaacca
cctgaacaaaaagctgctttccccccacctgaacaaaagactgcatttgacaagaagctg
cttgacagatttgattatgatgatgagccagaagctgtagaagaatcaaaaaaagaggat
actgctggcatcactcctgtggttcctgctgttgcagtgccccctgcacctaccgtggct
gcacctgctgctgccgttgctgctgctgctgctgtggctgctgccactgctcctgcgcct
ccttcagccacaccagctgccacctctcctcctccacaggcaccatttggatttcctgca
gatggcatgcaacaaccagcttatgcacaacatcaaaatatggagcagtttcaaactcga
atgatgggaatgcaacaagacccaatgcaccatcaggttccactccctccaaatggacag
atgccaggatttggacttcttcctgcacctccgtttcctccaatggctccacctgtgatt
cctcctacaccaccagtgcaacagagtttccagccttcttttcaggcacaaaatgaacca
cttgcacagaagccacatccacaggaaatggaagttgaacagccttgtattccagaagtc
aagcgacatatgcctgataacagaaagtcaagatctaggtcagcatccaggtcaccaaaa
aggaggcgatcgagatctagttctagatctcggaggtctcggcatcgacggtctcgatct
cggtccagggatagacgccgacattctcctcgctctcgatcccaagaaagacgggataga
gaaaaagagagagaacgtcgacaaaaaggtcttcctcatatcaaatcagaaactgcaagt
gtttgtagtactacactctgggtgggacaactagacaaaaggactactcagcaggatgtt
gccagtctcttggaagagtttggtccaattgaatcaattaatatgattcctcccaggggt
tgtgcctatattgttatggttcataggcaagatgcctatcgtgcccttcagaaactgagc
cgcggaaactataaagtgaaccaaaaatccataaagattgcctgggccttaaacaaagga
ataaaggcagattataaacagtattgggatgtagaacttggtgttacttatattccatgg
gataaagtcaaacctgaagaactggaaagtttttgtgaaggaggaatgttggacagtgat
accctcaacccagattggaaaggaatccccaagaagcctgagaatgaagtggctcaaaat
ggaggagcagaaacctcacacacagagccagtgtccccgatacctaaacctttacctgtg
cctgtccctcctattcctgttcctgcacctataacagtgccacctccacaggtcccgccc
catcaggcaggtcctccagtagttggagctctgcagccacccactttcacgcctcccatg
ggaattcctcctccaggttttggtcctggtgttcctcctcctccaccaccacctcccttt
ttgcgcccgggatttaatccaatgcatttaccgccaggttttcttcctcctggaccccca
cctcctataactccaccagtatctattcctcctcctcacactccaccaataagcatccca
aactctactatcgctggtataaatgaagacactacaaaagacttatctattggaaatccc
attccaacagtggtgtctggggctagaggaaacgctgagtctggtgacagtgtgaaaatg
tatggctctgctgtgccacctgctgcacccacgaatctgcccacccctcctgtaacccag
cctgtttcacttcttggcactcaaggagttgcccctggtcctgtgattgggctccaggca
ccatctactggtcttctaggtgcacgacctggactaatcccactccagcgccctccagga
atgcctccaccacacttacagcgattccctttgatgccaccccgccctatgccaccacac
atgatgcccagaggcccaccaccaggaccaggaggctttgcaatgcctccaccacatgga
atgaaagggcccttcccaccacacggcccctttgttaggcctggtggaatgccagggctt
gggggccctgggccaggcccagggggtcctgaagacagagatggaaggcaacaaccaccg
cagcaacagcaacagcagcaacagcagcagcctccacctcagccacaaccacagcaacca
ccgccatcacaacagccaccatcagctcagcagcagcctcagcaatttagaaatgaaaac
aggcagcagtttaattcaggtagagaccaagaaaggtttggaagaagatcattcggaaat
agggtggaaaatgaccgggaacggtatgggagccgtaatgacgatagagatagtaatcgt
gaaaggagagaatggggaagaaggagccctgaccgcgacaggcacagagacttggaagaa
agaaatagacgctctagtgggcatcgagatagggagagagattctagagatagagagtct
cgcagagagaaggatgaaaaccgagggaaggagaagtccgaggtgactaacagggcaggt
ggtaaagccatcgagcctccacctagccaagtgggaaccgtagacactgtttcagaactt
gataaaggggaggccaaggccacagtggtaaaaccctctgaagaggcacctgctgaggct
acctcatccgttgaacctgaaaaagattctagctcagcaacagagacaactcgctag
DBGET
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