Dipodomys spectabilis (banner-tailed kangaroo rat): 122114547
Help
Entry
122114547 CDS
T07891
Symbol
Spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp05014
Amyotrophic lateral sclerosis
dsp05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
122114547 (Spg11)
05022 Pathways of neurodegeneration - multiple diseases
122114547 (Spg11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsp03400
]
122114547 (Spg11)
DNA repair and recombination proteins [BR:
dsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
122114547 (Spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
122114547
NCBI-ProteinID:
XP_042543709
LinkDB
All DBs
Position
Unknown
AA seq
2416 aa
AA seq
DB search
MERVLPMLLVPLPPEATGQLGCGAQLHRGQEALGSLTASGRLLVLSLAPGRRGGGCCRLE
GPFRHFLWEDSHSSTSTDKPKMLALTENYELVVYEFNLKDGQCDAAVLHSCSGKTLEKLI
EDQDVSISLLSLRILSFHNNTSFVFINKCMILHVVFPEKDADIGVLSCFMLPLPTQTMDT
IIDIQLCRGILFVLSSLGWIYIFNTVEGTAIARVDLALLQEVMHNEQQQELARISSLASL
KVSQDLDVVVLVSNSSSAIALNLNLYFRQYPEHLLYERTLEDLPIERPKGIDEDDPVNSL
YNMKLTKFSFQIDRSWEAQLSSLNETMKNSKLEVSCHVPWFQDVLHLESPNSHNTRLPSW
AFIPQSMMCGHYTLPLKDHAKTSDPGKSWKIMHLSEQEQPRELKCMSVTGFTALFTCAEE
TAGYTIILWDLETQGMQCISLGQKCVPVDSSGDQQLCLVVTENGLSLILFGLTQEEFLNR
LMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFFLKSKENLFTLSPKSSV
DGQFHHAPSSLYLKNVEELTPALDLLCAAIRESDSETQSKHFSEQLLHLTLSFLNKQIKE
LFIHTEELDEELQKGVNILTNYINELRTFMIKFPWKLTDTKDEYVINKNVPTVKENDAWE
RLSCEEVIVQAILNNKIPEAQTFFRINNHPAQRLQELIKIGLDLVYDSLKNNNIKEASEL
LKNMGFDVRDQLLKICFYTTDKYIRDFLVEILKEKKCFSEKENRTIDFVHEVEKLYSGHV
QENVQIQSFPRYWIKEQDFFKHKSVLESFLKCDHKDELKEDHRIALNWAQWWDRPTQEYI
LFPKISPEEYRSYSPEALWKYLTAHHDWLSITLWIEEFQSQENYVSLQNKWPPLTVDIID
QNTCCNNYMRNKILDKLARNGIFLPSELEDFELFLLRLSRIGGVIQDSLPVQNYQSKEGW
DFHSHFIRYCLEHSLQHLLYVYLDYYKLSPENCPCLEKKELHEAHPWFEFLVQCRQVSSN
LTDSKLIFQASLANAQILIPTNQASVSSMLLEGHTLLALATTMYAPGGVSQVVQSEENEI
SSKKVDPQLLKMALTPYPKLKTALFPQCTSPTVLPPDITLYHLIQSLSPFDPGRLFGWQS
ANTLAIGDSLSQLPHFSSPELVNKYAIMERLNFTYYLYHGRPSFAFGTFLVQELIRSKAP
KQLTQQVGKEVYTLGLSSFYIPAVGAACICFLELLGLDSLKLRVDMKVANVIVGYRCRNG
AAQYTITIESLAEKLSKLADGEKATTEELLVLLEEGTWNSIQQQEIKRLSSESSNQWALV
VQFCRLHNMKLSTSYLRECAKANDWLQFIVYSQQHNYHQEEVKALLQYFSPAPQDHLRLA
FEKLPSVSNCRVDSNQAYKPLEELQTNKEETTDFFAVLLRCSEAPGSWRWLLAEAVRQQA
PVLSALASCLQDASTVSCLCVWIITSVEHSIAAEAMGHVHGSVETHTWDLEDLAIVWRTL
LSRQKSRTLIRGFQLFLKDSPLLLMLEMYELCMFFKNYKDAQTKLLEFQKSLETLDTATA
SVLPVIPVTWLKDQMCFLLKLMPQQCQTQYELGKLLQLYVGAEHLFSDGPDVKKLCVLSQ
ILKGTAIAINHVIITNYSIENFQHECKSILERLQMDGQFALARRVAELAELPVDSLVIEE
TIKEMQTLKHIAQWSLKQTRIDFWKKCHENFKKNSISNKAASSFFSTQALVACEHQAGPG
STAERHLLLTLAGHWLAQEEPVPLEQLEELEQQIWICRITQHTLRRNPEGTEPRFSRQIS
TSGELSFGSLASEFSFSKLAALNTSKYLELNGLPSKETCENRLDWKEQESLNFLIGRLLD
DGCIHEASRVCRYFHFYSRDVALVLHCRALASGDASMDDLHPEIRTLLQSARLPEEQEDL
GIPLRKAHSTSSLDSQSFVMVSRSDETVTNLETLTSTCLNGKNYCRQVLCLYELAKELDC
SYADVAAQDGKTTLRAILASQKPDRCRRAHAFISTQGLKPETVAEIVAEEVTRELLAPPE
GTGHKQMFNPAEESQTFLQLTALCQDRTLVGMKLLDKISCVPQGELSCTTELLILAHHCF
TLTCHMEGIIRVLQAARMLTDNHLAPKEEYGLVVRLLTGIGRYNEMTYIFDLLYRKHYFE
VLMRKKLDPNGTLKTALLDYIKRCHPGDSEKHNMIALCFSMCREIGENHEAAARIQLKLI
ESQPWEDSLQDTPHLKQLLLKALTLMLDAAESYAKDSCVRQALHCHRLTKLLTLQIHFLN
TGQNTMIINLSHQKLMDCIMALPRFYQASIVAEAYDFVPDWAEILHQQVILKGDFNYLEE
FKQQKSLRPSIFEEISKKYKHQPTDMATENLKKLLSYCEDIYLYYKLAYEHKFLDIVNGL
LKDPQTGCCLKDMLAG
NT seq
7251 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggttctgcctatgttactggtgccgctccctcccgaggcgacggggcagctg
gggtgcggagcgcagctgcacagggggcaggaagccctggggagcttgacggcttcgggc
cgtctgctggtgctttccctggccccgggccgccgcggcgggggctgctgccgcctcgag
gggccgttccggcactttttatgggaggattctcatagcagcacctcaacggacaagccc
aaaatgcttgctcttactgaaaattatgaactggttgtatacgaatttaatttgaaagat
gggcaatgtgatgcagccgtattgcacagctgtagtgggaagaccctggaaaaactcatt
gaagatcaggatgtcagtatttctttactgtcattgagaattctgtcatttcacaataac
acatcatttgtgttcatcaacaagtgtatgatcctacacgttgtatttcctgagaaagat
gccgacattggagtactcagctgtttcatgctacccttgcccacacagacaatggacacg
attatcgacatccagctctgcagaggaattctttttgttttgagtagtttaggctggatc
tatatttttaatactgtggaaggcacagctatagcacgtgtggatttagcacttctccaa
gaagttatgcataatgagcagcagcaggagctggccaggatttcttccttggcctcactg
aaagtgtctcaagacctagatgtggtggtgcttgtcagcaactccagctctgcaattgca
cttaacttaaacttgtatttcaggcaatatccagaacatctactatatgaaagaacacta
gaagaccttccaattgaacgacctaaggggatagatgaagatgatcctgttaactctctc
tacaacatgaagcttaccaagttttccttccagattgatagatcatgggaggcccagctg
tcatcactgaatgaaacaatgaagaactccaaactggaggtttcctgtcatgttccctgg
tttcaggatgttttacatttggagtcccctaatagccataacacaagactaccaagctgg
gcttttattccacagagtatgatgtgtggtcattatactttgcccctgaaagatcatgcc
aagaccagtgatccaggaaaatcatggaagataatgcacctcagtgaacaagagcagccc
agagaactgaaatgtatgtctgtaacaggctttactgcactatttacttgtgcagaggag
actgctggctacaccattatcctctgggacttggagacccagggcatgcagtgtatttcg
cttggccagaagtgtgttcctgtagacagtagcggcgaccagcaactgtgccttgtagtg
acagaaaatgggctttctctgattctgtttggtttaactcaagaggaatttttaaacaga
ctaatgatccacggaagtgccagcactgtggattctctttgtcatctcaatggttggggg
aggtgctcaattcccatccatgcactagaggctgggatagaaaatcgtcagctagacaca
gtagatttcttcttgaagagcaaagaaaatctttttactctgtcccccaaatcttctgta
gatggtcagtttcatcatgctccatcaagcttatatttaaaaaatgtggaagagttgacg
ccagcattggacttactttgtgcagcaattagagaaagtgattctgaaacccagagcaaa
cacttttcagaacagctgcttcatcttacactgtctttccttaataaacaaataaaggaa
ctttttattcatactgaagaactagatgaagagctacagaaaggagtaaacattttgaca
aactacatcaatgaactccgaacctttatgataaagtttccttggaagctaacagatact
aaggatgaatatgttatcaataaaaatgtccccacagtaaaagagaatgatgcatgggag
agactcagctgtgaggaagttattgtccaggccattttaaataataaaataccagaggca
caaaccttcttcaggattaacaatcatcctgctcaaagactacaggagcttatcaagata
ggcctagatttggtctatgacagtttaaagaacaataatataaaggaagcctctgaactt
ttgaagaatatgggctttgatgtgagagaccagttgctcaaaatatgcttctatacaact
gataaatatatacgggactttttggttgaaattttgaaagagaaaaaatgcttctctgaa
aaagaaaacagaactatagacttcgtgcatgaagttgagaagctttattcaggacatgtc
caagaaaatgtgcagatccagtcctttcccaggtactggataaaggaacaagattttttc
aagcacaaatctgtcttggagtcattcctcaaatgtgatcataaagatgaacttaaagaa
gaccatagaattgcgttaaattgggctcagtggtgggatagaccaacccaagaatacatc
ctttttcccaagataagtccagaagaatacagatcatattcaccagaagccctctggaaa
tacctcacagctcaccatgattggttaagcatcaccttatggattgaagaatttcagtcc
caggaaaattacgtttcacttcagaacaagtggcctcctctaactgttgatattattgat
cagaatacttgctgtaacaactacatgaggaataaaattttagataaactggccaggaat
gggatttttcttccatctgaactagaagattttgaactcttcctcctaagactaagccgt
attgggggtgtaatacaagattcactcccggttcaaaactaccagtccaaagaaggttgg
gatttccattctcacttcattcgctactgtttggagcatagtctacagcatcttctttat
gtctatcttgactattacaaacttagtcctgaaaattgtccctgtttggaaaagaaagaa
ttacatgaagctcacccttggtttgaatttttagtccagtgtcgacaggtttccagtaat
ttaacagattccaaactgatcttccaggctagccttgcaaatgctcagattttgattccc
accaatcaggccagtgtaagcagtatgctactggaagggcataccctcctggcccttgct
actacaatgtatgctcctgggggggtcagccaggttgttcagagtgaagaaaatgagatc
tcttcaaagaaagtggatccccagctactgaagatggccttaactccttacccaaagctc
aaaactgctctcttcccacagtgcacttctcctactgttctgccacctgatattacactc
taccacctcattcagtccttatcaccatttgatcctggcaggttgtttggctggcagtct
gccaacacactagccataggagattcgctgagtcagctcccacatttctctagtcctgag
ctggtgaataaatatgctataatggaacgtctaaattttacttattatttatatcatgga
cgcccatcatttgcctttggtacttttctggtccaggaattaattaggagcaaggctcct
aaacagctgacccagcaagtaggcaaggaagtctatacgctagggctgtcctccttctac
atacctgcagtcggagctgcctgcatttgtttcttagaattgcttggtcttgacagcctc
aagctcagagttgacatgaaagtggcaaatgtaattgtgggctacaggtgtagaaacgga
gcggctcagtacactattaccatagagtctctagctgaaaaattatctaaactggcagat
ggtgaaaaggcaaccacagaagaacttcttgttctcttagaagaaggtacttggaacagt
attcagcagcaggaaataaagagattatccagtgagtctagcaaccagtgggcactagtg
gtacagttctgcaggctccacaatatgaaattgagcacgtcttatcttagagaatgtgcc
aaagcaaatgattggctgcagttcattgtttatagccaacaacataactaccaccaggaa
gaggtgaaagcgcttcttcagtacttcagccctgcccctcaagaccacttacggctggct
tttgagaagttgccatccgtgtccaactgtagagtggacagcaatcaagcctacaagccc
ctcgaggaactgcagaccaacaaagaagagacgactgatttctttgcagttcttctccgg
tgctcagaggcaccaggctcctggcgctggctcctggctgaggccgtgagacagcaggcg
cctgtcctcagtgctctggcctcgtgtctccaggatgccagcactgtttcttgtctctgt
gtctggatcattacttctgtggagcacagtattgcagccgaagcaatgggacacgttcac
ggctcagtggagacccacacgtgggaccttgaggaccttgccattgtctggagaacgtta
ttgtcacggcagaagagcagaactctcatccgaggtttccagcttttccttaaggattcc
ccattactactgatgctagagatgtatgaactgtgtatgttcttcaagaattacaaggat
gcccaaactaaactcctggagttccagaagagtcttgaaactcttgatacagcaaccgcc
agcgtcctccctgtcattcctgttacatggctgaaggatcagatgtgtttcctattaaag
cttatgccacagcagtgccagacgcagtatgagctgggaaagcttttacagctgtatgtt
ggagcagagcatctcttcagtgatggtccagatgtgaagaagctgtgtgtccttagccag
attttgaagggtacagccatagctattaatcatgtaattattaccaactacagcattgag
aatttccagcatgaatgtaaatccattttggaaagactgcagatggatgggcagtttgct
ttggccagaagagtagccgaattagctgagttgcctgtggacagcttggttattgaagag
acaataaaggaaatgcagaccttaaaacacattgcacagtggtccttgaaacaaacaaga
attgacttctggaaaaaatgccatgagaattttaagaagaattccatttcaaacaaagca
gcctcttccttcttctccacgcaggcccttgtggcctgtgagcatcaagctggaccaggc
agcactgcggagcgccacttgctgctcaccctggcagggcactggcttgcccaggaggaa
ccggtgccattggagcagctggaggagctggagcagcagatctggatctgccgtatcaca
cagcacaccctgagacggaatccagagggaacagagcctaggttttctcgacagatctca
acaagcggtgaactttcttttggcagcttagccagtgagttttccttctccaagttggct
gctttgaacacgtcaaaatatctagagcttaatggccttccatccaaagagacatgtgaa
aatagactagactggaaagagcaggagtcactgaactttttgattgggcgcctactagat
gatggctgtattcatgaagccagccgagtatgccggtattttcatttctatagccgagat
gtggcgttggtgttgcactgcagagctctggcctcaggggacgccagtatggacgacctg
cacccagagatccgcactctgctgcagagtgccaggctgcctgaggaacaggaggacctg
ggcattcctctaaggaaagcccacagcacttccagcctggatagccagtcatttgtgatg
gtatcccgcagtgacgagacggtgacaaacctggagactctgaccagcacgtgtctcaat
ggaaagaactactgccggcaggtcctctgtctatacgaacttgctaaggagttggactgt
tcctatgcagatgtagctgcccaagatggcaagaccactcttcgggcaatcttggcctct
cagaagcccgacaggtgcagacgagcccatgccttcattagcacccagggccttaagcca
gaaactgtagctgaaattgtggctgaagaggtgacacgggagctgctggccccaccagag
ggcacaggacataagcaaatgttcaacccagcagaagaaagccagacctttctgcagctg
acagctctgtgtcaagaccgcacgttggtaggcatgaagttgttggataagatttcctgt
gttccccagggggaactgtcttgcaccacagagctcctgatcctggcccatcactgcttc
acgctgacttgccacatggagggcatcattagagtcctgcaagctgcccggatgctcaca
gataaccacttggcccccaaggaggagtatggactggtggtgcgtctcctcactggcatt
ggacgatacaatgagatgacatacatatttgatttgctgtatagaaagcactacttcgaa
gtgctgatgaggaagaagctggatccgaatggcaccctgaagacagctctgctggactac
atcaaacgctgccaccctggggacagtgagaaacacaatatgattgcactgtgctttagt
atgtgccgagagataggggagaatcatgaggcagctgctcgcatccaactgaaattgatt
gagtcacagccctgggaggacagcctccaggacacaccccacttgaagcaactgctgctg
aaggccctgactctgatgctggatgcagcagagagctacgccaaggactcctgtgtgcga
caggccctgcactgtcatcggctcaccaagttgctaacactacagattcactttctgaac
actggccagaacacaatgatcatcaacttgagccaccagaagctgatggactgtatcatg
gccctacctcggttctaccaggcatctatagtggctgaggcctatgactttgttcctgac
tgggctgaaattctacaccaacaagtgattcttaaaggcgacttcaattatttggaggaa
tttaagcagcaaaagtcattaagacctagtatatttgaagagatttccaaaaaatataaa
catcagcctactgacatggccacagaaaacctgaagaagttgctctcatattgtgaagat
atctacctgtactacaaattggcatacgaacataaattccttgatattgtgaatgggctt
ctgaaggaccctcaaacaggctgctgtctaaaggatatgcttgcaggttag
DBGET
integrated database retrieval system
