Dipodomys spectabilis (banner-tailed kangaroo rat): 122115408
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Entry
122115408 CDS
T07891
Symbol
Rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03440
Homologous recombination
dsp03450
Non-homologous end-joining
dsp04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122115408 (Rad50)
03450 Non-homologous end-joining
122115408 (Rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
122115408 (Rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsp03032
]
122115408 (Rad50)
03400 DNA repair and recombination proteins [BR:
dsp03400
]
122115408 (Rad50)
DNA replication proteins [BR:
dsp03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
122115408 (Rad50)
DNA repair and recombination proteins [BR:
dsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
122115408 (Rad50)
BRCA1-C complex
122115408 (Rad50)
NHEJ (non-homologous end-joining)
MRX complex
122115408 (Rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
AAA_29
DUF2703
AAA_13
Motif
Other DBs
NCBI-GeneID:
122115408
NCBI-ProteinID:
XP_042544788
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELVAVQRSMLCSQKSKKTEFKTLEGIITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEDSNWPLSEGKMLKQKFDEIF
SATRYIKALDTLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDRITTKEAQLASSKEI
VRSYENDLEPLKDRLKDIEDNLAKVMKLDNEIKALDSRKKQMEKDNNELEQKMEKVFQGS
DEQLNELYYNHQKTVRDKERKLIDCQRELEKLNKESRLLNQEKSELLVEQGRLQLQADRH
QEHIRSRDSLIQTLATQLELDGFERGPFSERQIKNFQKLVRERQEREAETASQLMNDLAE
KETQKQKQIDEIRDKKTGLGRIIELKSEILSKKQNELKNVKYELQQLEGSSDRILELDQE
LTKTERELSKAEKDSNVETLKTEVISLQNEKADLDRTLRKLDQEMEQLNHHTTTRTQMEM
LSKDKADKDEQIRKIKSRHSDELTALLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHISNELKRKEEKLCSYEDKMFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
KKERRRDEMLGLVPMRQSIIDLKEKEIPDLRNRLQNVNRDIQRLKNDIEEQETLLGTIIP
EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQHLKSMTNELKSEKLQIATNLQRRQQLEEQTVELSTEVQS
LHREIKDAKEQINPLETTLEKFQQEKEEIINKKYSSNKTAQDKLNDIKEKVKNINGYMKD
IENYIQDGKDNYKEQKETELNKVIAQLSECDKHKEKISKEMGTMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKRHVKEMGQMQVLQMRKEHQQLEDNIDSIKRNHSLALGRQKG
YEEEIIHFKKELRDPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRINKNIDQCSEIVTCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctgggagtgcggagttttggaatagaggacaaa
gataagcaaattatcactttcttcagccccctcacaattttggttggacccaatggggcg
gggaagacgaccatcattgaatgtctaaaatatatttctactggagacttccctcctgga
actaaaggaaatacattcgttcatgatcccaaggttgctcaagaaacagatgtaagagcc
cagatccgtctgcagtttcgtgacgtgaatggagaacttgtagctgtgcagagatctatg
ttgtgcagtcaaaaaagcaagaagacagaatttaaaactctggaaggaatcattacgaga
acaaagcatggagaaaaggtcagtcttagctctaaatgtgcagaaattgatcgagaaatg
atcagttcacttggcgtttccaaatctgttctaaataatgtcattttctgtcaccaagaa
gattcaaattggcctttaagtgaaggaaagatgctgaagcagaagtttgatgagatcttt
tcagccactaggtacattaaagctttagatacacttcgtcaagtccgtcagacacaaggt
cagaaagtaaaagaatgtcaaacagaattgaaatatctgaaacaaaataaggaaaaagct
tgcgagattcgtgatcggattactactaaagaagcccagttagcatcttcaaaggaaatt
gtcaggtcgtatgagaatgatcttgaaccattgaaggatcgtctaaaagacattgaagat
aatcttgctaaagtaatgaaacttgacaatgaaattaaggccttggatagtcgaaaaaag
caaatggagaaagataacaatgaactagaacagaaaatggaaaaggtttttcaaggaagt
gatgagcaactgaatgagttatattacaatcatcagaaaacagtaagggataaagaaagg
aaattaatagactgccagcgtgaactggaaaaattaaataaagaatctaggcttctcaat
caagaaaaatcagaactacttgttgaacagggtcgtctacagctgcaagcagatcgccat
caagaacacatacgatctagagattcattaattcagactttggcaacacagctagaattg
gatggctttgagcgtgggccgttcagtgaacgacagattaaaaattttcagaaacttgtg
agagagagacaagaaagggaagcagaaactgccagccaactgatgaatgacttggcagaa
aaagaaactcagaagcaaaaacagatagatgaaatacgggataagaaaactggactggga
agaataattgagttaaaatcagaaatcttaagcaagaagcaaaatgaactgaaaaatgtg
aagtacgagctacagcagttggaaggatcttcagacaggattcttgaactggaccaggag
ctcacaaaaactgaacgtgaactaagcaaggctgagaaagacagcaatgtagaaaccctg
aaaacagaagtcataagccttcaaaatgagaaggcagacctagacaggaccttgcgtaaa
ctggaccaggagatggagcagttaaatcatcatacaactactcgcacccagatggagatg
ctgtccaaagacaaagctgacaaagatgaacaaatcagaaaaataaaatctaggcacagt
gatgaactaactgcactgttggggtattttcctaacaaaaaacaacttgaagactggctt
catagtaaatcaaaggaaattaatcagaccagggacagacttgccaaattgaacaaggaa
ctagcatcagctgagcaaaataaaaatcatataagtaatgaactaaaaagaaaagaagag
aagttgtgcagttatgaagacaaaatgtttgatgtttgtggtagccaagattttgaaagt
gatttagacaggcttaaagaggaaattgaaaaatcctccaaacagcgagccatgctggct
ggagccacagcagtttattcccagttcattactcagctgacagatgaaaaccagtcctgc
tgccctgtctgtcagagagtttttcagacagaggctgaactacaagacgtcattagtgat
ttgcagtctaagttgcgacttgctccagataaactcaagtcaacggaatcagaactaaag
aagaaagaacgacgtcgtgatgaaatgctggggcttgtgcccatgaggcaaagcataatt
gatttgaaggagaaggaaataccagacttaagaaatagacttcagaatgtcaatagagac
atacagcgtctaaagaatgatatagaagagcaagaaactcttttgggtacaataatacct
gaagaagaaagcgctaaagtatgtttgacagatgttacaatcatggagaggttccagatg
gaactaaaagatgttgaaagaaaaattgcacaacaagcagctaagctacaaggaatagac
ttggatcgaactgttcaacaagtaaaccaggaaaaacaagaaaaacaacacaaattagat
acagtttccagtaagattgaattgaatcgtaagctcatacaggaccagcaagaacaaatt
caacacctaaaaagtatgacaaacgagcttaagtcagaaaaacttcagatagccactaat
ttacaacgtcgtcagcaactggaagagcagacggtggaattatccactgaagttcaatct
ttacacagagaaatcaaggatgcaaaggaacagataaaccctttagaaaccacattagaa
aaattccagcaagaaaaagaagaaataatcaacaaaaaatactccagcaataaaacagca
caggacaaactgaatgatatcaaagagaaggttaaaaatattaatggttatatgaaagac
attgaaaattacattcaagatggaaaagataactataaggagcaaaaagaaactgaactt
aataaggtgatagctcaactaagtgaatgtgacaaacacaaagaaaagataagtaaagaa
atgggaacaatgaggcaagacattgatacacagaagatacaagaaaggtggctacaagat
aaccttaccctaagaaaaagaaatgaggaactgaaagaggttgaagaagaaagaaaacga
catgtgaaggaaatgggtcaaatgcaagtcctgcagatgagaaaggaacatcagcagttg
gaagataacatagacagtataaaaagaaaccacagtttggccttagggcgacagaaaggt
tatgaagaagaaattattcattttaagaaagaacttcgagatcctcaatttcgggatgct
gaggaaaagtatcgagaaatgatgattgttatgagaacaacagagcttgtgaacaaggat
ctggacatctattataaaactcttgaccaagcaataatgaaatttcacagtatgaaaatg
gaagaaatcaataaaattatacgtgatctttggcgaagtacctaccgaggacaagacatt
gaatacatagaaattcggtcagatgctgatgaaaatgtgtcagcttctgataaaaggcgg
aattacaactacagagtcgtgatgctaaagggagacacagctttggatatgcgaggacga
tgcagtgctggacagaaggtgttggcctcgctcatcatccgcctagcactggcagagaca
ttctgcctgaattgtggcatcctagccctggatgaaccaacaacaaatcttgacagagag
aacattgaatcccttgcgcatgctctggttgagataataaaaagtcgctcacagcagcgt
aacttccagcttctggtcatcactcacgatgaagattttgtggagctcttgggacgttct
gagtacgtggagaaattctacaggattaataagaatattgatcagtgctcagagattgtg
acatgcagtgttagctccctgggctcttacgttcattaa
DBGET
integrated database retrieval system
