Dipodomys spectabilis (banner-tailed kangaroo rat): 122115546
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Entry
122115546 CDS
T07891
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04622
RIG-I-like receptor signaling pathway
dsp05161
Hepatitis B
dsp05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122115546
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
122115546
09172 Infectious disease: viral
05161 Hepatitis B
122115546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122115546
03041 Spliceosome [BR:
dsp03041
]
122115546
03036 Chromosome and associated proteins [BR:
dsp03036
]
122115546
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122115546
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122115546
mRNA cycle factors
Common to processing body (P body) and stress granule
122115546
Spliceosome [BR:
dsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122115546
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122115546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
APC_u13
Motif
Other DBs
NCBI-GeneID:
122115546
NCBI-ProteinID:
XP_042544965
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MSHVPLENTFGLDQQFDDLNLNSSDNQNGGGSSVSKGRYIPPHLRNREASKGLYDKDSSG
WSSSKDKDAYNSFESCDTRGKSSYFSDRGNSSRGRFDDRGRSDYDGIGNRGDRTSFGKFE
RSGHSRWCDKSDEDDWSIPLPPNERLEQELFSGGNTGINFEKYDDIPVEATGSNCPPHIE
NFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS
QIYTDGPGEALQAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV
YGGAEIGQQIRDLERGCHLLVATPGRLLDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ
IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV
WVEDSDKRSFLLDLLNATRKDSLTLVFVETKKGADSLEDYLQHEGYACTSIHGDRSQRDR
EEALYQFRSGKSPILVATAVAARGLDISNVKHVINFDLPNDIEEYVHRIGRTGRVGNLGL
ATSFFNERNTNITKDLLDLLIEAKQAVPSWLESMAYEHHYKGGSRGRSKSRFSGGFGARD
YRQSSGSSNSGFSSNRASSSRSGGSGHGSNRGLAGGGYGAFYNSDGYGGNYNSQGVDWWG
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtgccgttggaaaatacatttgggctggaccagcaatttgatgatctaaac
ctgaactcttctgataatcaaaatggaggagggagttcagtgagcaaagggcgctatata
cctcctcatttaagaaacagagaagcatctaaaggactctatgataaggacagttcagga
tggagctctagtaaagataaggatgcatacaacagttttgaatcttgtgacacaagagga
aagtccagttattttagtgatcgtgggaacagttcaagaggaagatttgatgatcgtggt
aggagtgactatgatggtattggcaatcgtggtgacagaactagctttggcaaatttgaa
cgaagtggacatagtcgttggtgtgacaaatcagatgaagatgattggtcaatacctctt
ccaccaaacgaacgcctagagcaggagcttttttctggagggaacactgggattaacttt
gaaaaatatgatgatataccagtagaagcaacaggcagtaactgtcctccacatattgaa
aatttcagtgatgtagagatgggagagattatcatggggaacattgagcttactcgttac
actcgccctaccccagtgcaaaaacatgctattcctattatcaaagaaaaaagagattta
atggcttgtgctcagacagggtctggaaaaacagcagcatttcttctacccatattgagt
caaatatacacagatggtccaggagaggctttacaggctgtgaaggaaaatggaagatat
gggcgccgcaagcaatacccaatctccttggtgttggctccaacaagagaattggctgta
caaatctatgaggaagccagaaaattttcctaccggtctagagttcgtccttgtgtagta
tatggtggtgctgaaattgggcagcagattcgggatttagaacgtggatgccacttgtta
gtagctactcctgggcgtctactggatatgatggaaagaggaaaaattggcttagacttc
tgcaaatacttagtgttggatgaagctgatagaatgctggatatgggctttgaacctcaa
ataagacgaatagttgaacaagatacaatgccaccaaagggtgttcgtcacactatgatg
tttagtgctacttttcctaaggagattcagatgcttgctcgtgacttcctggatgaatat
atctttcttgctgtaggtagagttggctctacttctgagaacatcacacaaaaagtagtt
tgggtagaagattcagacaaaaggtcatttctgcttgatcttttaaatgcaacaaggaaa
gattcactgactttagtgtttgtggagaccaaaaaaggtgcagattctctggaagattac
ttacaacatgaaggatatgcatgtacaagcattcacggagatcgatcacagagagatcgg
gaggaggccctttaccagttcagatcaggaaaaagcccaatcctagtggctactgctgtg
gcagcaagaggtcttgacatttcaaatgtcaaacatgttatcaattttgatttgccaaat
gacattgaagaatatgtgcatcgtattggacgtacagggcgtgtaggaaaccttgggctt
gctacatcatttttcaatgaaagaaatacaaatatcaccaaagatttgttggatcttctt
attgaagctaaacaagcagtgccatcttggttggaaagtatggcttatgaacaccattac
aagggaggcagtcgtggacgttctaagagtagattcagtggaggattcggtgccagagac
tatagacaaagtagtggttccagcaattctggctttagtagtaatcgtgccagcagcagc
cgcagtggtggaagtggtcatggtagtaacagaggacttgctggaggtggatatggagca
ttctacaatagtgatggatatggaggaaattataactcccagggggttgactggtggggc
aactga
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