Dipodomys spectabilis (banner-tailed kangaroo rat): 122116362
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Entry
122116362 CDS
T07891
Symbol
Col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04151
PI3K-Akt signaling pathway
dsp04382
Cornified envelope formation
dsp04510
Focal adhesion
dsp04512
ECM-receptor interaction
dsp04820
Cytoskeleton in muscle cells
dsp04926
Relaxin signaling pathway
dsp04933
AGE-RAGE signaling pathway in diabetic complications
dsp04974
Protein digestion and absorption
dsp05146
Amoebiasis
dsp05165
Human papillomavirus infection
dsp05200
Pathways in cancer
dsp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122116362 (Col4a6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122116362 (Col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122116362 (Col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122116362 (Col4a6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
122116362 (Col4a6)
09154 Digestive system
04974 Protein digestion and absorption
122116362 (Col4a6)
09158 Development and regeneration
04382 Cornified envelope formation
122116362 (Col4a6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122116362 (Col4a6)
09162 Cancer: specific types
05222 Small cell lung cancer
122116362 (Col4a6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
122116362 (Col4a6)
09174 Infectious disease: parasitic
05146 Amoebiasis
122116362 (Col4a6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
122116362 (Col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dsp04147
]
122116362 (Col4a6)
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122116362 (Col4a6)
Exosome [BR:
dsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122116362 (Col4a6)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122116362 (Col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122116362
NCBI-ProteinID:
XP_042545948
LinkDB
All DBs
Position
Unknown
AA seq
1631 aa
AA seq
DB search
MGIQGPTGPQGFVGPPGLSGLKGERGSPGRLGPYGPKGDKGPMGVPGFLGINGIPGHPGQ
PGPRGPPGLDGCNGTQGAVGFPGHDGYHGILGPPGLPGRKGSKGEPAPPQGSFVGMEGDP
GLPGLDGISGPQGPPGSPGGAGSMGPPGLQGPPGPPGLPGPDGNMGLGFQGEKGVKGDVG
LPGPAGPPPSTGELEFMGFPKGKKGSKGVPGLPGFPGYPGFPDLESIGEKGEKGILGLPG
LRGPMGSGGVQGPPGRQGERGSPGFPGFNGFIGVKGERGSIGLPGPDIFTDINGAVISGY
PGDTGVPGVPGLRGDEGIQGQRGPSGNPGLPALTGIPGAPGPQGFPGLKGDQGNPGHTTI
GAAGLPGKIGLPGLPGAMGLPGPAFKTEILHDTKPGFPGLPGEQGQKGEPGLKGIKGDSG
FCSCDGGIHNAGPPGEPGLPGPQGLIGLPGLKGTRGDPGSGGTRGPAGAPGLFGPPGHAG
PKGKKGEPTAHRGSGLPGEKGDSGHRGIPGITGVPGMDGVPGLRGLPGLRGDDRHGFPGE
KGLPGLPGEKGQQGPPGSPGTGLPGLPGPRGLPGDKGVDGIPGKQGLHGPQGITLPCIIP
GSYGPSGVPGAPGLPGPKGVQGLPGTPGKPGSPGNKGEPGSPGLIQLPELPGFPGSHGEK
GLPGFPGLPGKDGLPGNSGSPGLPGSKGVPGDVFGAENGAPGEPGIQGLPGDKGFPGDSG
LPGPNGFHGRPGLLGPKGERGSPGASGQIGQPGPPGANDLYGIKGKSGHPGSPGLPGTSG
HPGKKGLKGEAGQPGSTTKEGVPGIKGLPGSPGLIGVLGNPGLPGVTGLPGLPGQKGEKG
SPGPAGFPGIQGLPGIPGASGVKGAPGSPGKMGTSGWAGSPGEKGDRGDPGPVGVPIPRP
PMLNLWFKGDKGSQGSAGSDGFPGPRGDKGEAGHPGSPGLPGAPGLPSTIKGLSGRPGPP
GALGLQGLPGLKGSPGITGFPGMPGEPGSRGLIGASGFPGTTGLPGSKGDQGQTFDIFGS
PGPKGKPGDPGFKGIKGKDGLIGDKGFPGPKGQDGEDGISGDAGLPGSPGLPGITGMRGD
PGLPGSSGHPGSTGLLGPSGLIGPKGFSGLPGLHGLNGLPGTKGTHGTPGSSITGVPGPA
GLPGPKGEKGMPGIVIGAPGQPGPRGQKGGRGFPGLQGPAGPAGAPGISLPSVTAGRPGD
PGPPGLDGERGRPGLQGSPGPPGPSSDQGDTGDPGYPGIPGLQGPKGDQGISGFSGLPGN
LGLKGVRGEPGFMGTPGKIGPQGDPGFPGMKGKAGPRGFPGPQGAPGRTPIAEVIQAPPG
PLGLPGLEGIPGLTGDPGLQGPIGLQGPKGSPGIPGKDGPSGLPGPPGTLGDPGLPGLQG
PPGFEGVPGKQGPFGRPGIPGPSVQVGYTLVKHSQSEQVPQCPIGMSQLWVGYSLLFVEG
QEKAHNQDLGFAGSCLPRFTTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGQAQ
IPQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVS
PGSCLEDFRATPFIECNGALGTCHYFANKYSFWLTTVEEKQQFREDPVSETLKTGQLHTR
VSRCQVCMKSL
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgggaattcaaggcccaacaggacctcaaggatttgtgggtcctcctgggttatcagga
ttgaaaggagaaaggggctccccaggccgtctgggaccatatggtccaaaaggagataag
ggtcctatgggagttcctggctttcttggcatcaatgggattccaggccaccctgggcag
ccaggccccagaggtccacctggtttagatggctgtaatggaactcaaggagctgttgga
tttccaggccatgatgggtatcatgggattctaggaccacccggacttcctggtcgtaaa
ggttcaaagggtgaacctgccccccctcaaggcagtttcgttggaatggagggagatcct
gggctgcctggcctggatggaatctctggcccacaaggaccacctggatctcctggaggt
gcaggatccatgggacccccaggattacaaggtcctccaggcccacctggccttcctggt
cctgatggaaatatggggttaggttttcaaggagaaaaaggagtcaagggggatgttggt
ctccctggacctgcaggaccaccaccatctacaggggagctagaattcatggggttcccc
aaagggaaaaaaggatccaagggtgtaccagggcttccaggtttcccaggctaccctggc
ttcccggacttggaatctattggagaaaagggagaaaagggaatccttggtctgccagga
ctaaggggtcccatgggctccggaggagtgcaaggccctccagggagacagggcgagagg
ggatccccaggctttcctgggtttaatggattcataggagttaagggtgaaaggggtagc
attggccttccaggtccagacattttcaccgatatcaatggtgctgtgatctcaggttat
cctggagacactggtgtaccaggtgtcccaggtcttagaggagatgaaggcatccagggc
cagcgtggcccttctggaaaccctggccttccagccttaacaggtataccaggtgcccca
gggcctcagggatttccaggcctcaagggagaccaaggaaacccaggacatacaacaatt
ggagcagcaggccttcccggcaaaattggtttacctggcttaccaggagcaatgggtcta
cctggcccagcatttaagactgaaattctgcatgacacaaagccagggttccctggtctc
ccaggagaacaaggtcaaaaaggagaaccaggcctcaaaggaataaaaggagactctggt
ttctgttcttgtgatggtggtatccacaatgctggaccacctggagaaccaggcctacct
ggcccacaaggtctcattggccttccaggccttaaaggaaccagaggagatccaggctct
gggggtacacgtggcccagcaggggctccaggtttatttgggcctccgggtcatgctggc
cccaaaggaaagaagggtgaaccaacagcccatagaggatctgggttgccaggtgagaaa
ggtgattctggccaccgggggatccctgggataacaggagtacctggaatggatggagtg
cctggcttacgaggtctaccaggccttcggggagatgatagacatggattcccaggtgaa
aaagggctcccaggacttcctggtgaaaagggccaacagggtccacctggatccccagga
actggacttccaggacttcctggacctcgtgggcttcctggagataaaggagtggatgga
ataccagggaaacaaggcctccatgggcctcaaggaatcaccttgccctgtattattccc
gggtcatatggtccatcaggtgtcccaggagctcccggattaccaggtcctaaaggggtc
caaggtcttcccgggacaccaggcaagcctggatctccaggaaataaaggagagcctgga
agtccagggttaattcaactcccagaactgccaggatttcctggatctcatggagaaaag
ggcttgcctggctttcctgggcttcctggaaaagatggcttgcctggaaactctggcagt
ccaggcttaccaggttccaagggagtcccaggtgacgtctttggtgctgaaaatggtgct
ccaggggagccaggaatacagggattgccaggagacaaaggatttcctggagactctggc
cttccaggacccaatggttttcatgggagacctggcttactaggccccaaaggtgagcgg
ggcagccctggagcatcaggacaaataggacagccaggccccccaggggctaatgaccta
tatggcatcaagggaaaatctgggcacccaggttcaccaggccttccaggcacttcagga
catcctggaaagaaaggtctgaaaggcgaggcgggtcaacctggatcaactacaaaagaa
ggcgtacctgggataaaaggccttcctggatctccagggctaattggtgtcttagggaac
ccaggcttgccgggggtcacaggtttgccaggcctcccaggtcaaaagggtgaaaaggga
tcccctggaccagcaggtttcccaggaatacaaggtcttcctggcatccctggagcaagt
ggagtaaagggagctcctgggtcacctggaaagatgggaacatctggatgggctggtagc
cctggtgagaaaggagacagaggtgatccagggccagttggagtacccattccaagacct
ccaatgctcaacctttggttcaaaggagacaaaggctctcagggttcagctggatcagat
ggatttcctggacccagaggtgacaaaggagaggctggccatccagggtcaccaggccta
cctggagctcctggtctccccagtacaatcaaagggcttagtgggaggccaggcccccct
ggcgccctgggactacagggcttacctggcctgaaggggtccccaggaatcacaggtttc
ccaggaatgccaggagaacctggttcacgaggtctcattggggcttctgggttcccagga
acaactggtctcccaggttcaaaaggagatcaaggccagacatttgacatttttggtagc
ccaggacccaagggaaaaccaggcgatccaggttttaaaggtataaaagggaaagatgga
ctgattggtgataaaggctttccagggcccaaaggtcaagatggagaagatggtatttct
ggagatgctggccttcctggttccccaggacttccaggaattacagggatgagaggagat
ccaggacttccaggttcctctggtcatccagggtcaactgggctcctgggaccatctggc
ttaataggacctaaaggattctctgggcttcctggtttacatggactgaatgggcttcca
ggaaccaagggtactcatggaactccaggatccagtatcactggtgttcctgggcctgct
ggcctgcctggtccaaaaggagaaaaaggcatgccaggaattgtcattggagctccaggg
caaccaggtccaagaggacaaaaaggtggtcgaggattcccaggtctccaaggacctgct
ggtcctgctggagctccaggcatctccttgccctcagtcacagcaggacggcctggtgac
ccaggtccaccaggcctagatggagaacgaggccgtccaggcctccaaggttccccaggt
ccccctggaccatcctcagatcaaggtgacactggagaccctggctaccctggaattcct
ggccttcaagggcccaagggagatcaaggaatttcaggcttctctggtctccctggaaat
ctaggactgaaaggagtacgaggtgagcctggcttcatggggactccaggcaagattggg
ccacaaggagacccaggatttcctggcatgaaggggaaagcagggccaagaggctttcct
ggtccccaaggtgctcctggacgaacaccaattgcagaagttatccaggctcctcccgga
cccctgggtcttccaggcctcgaaggcatccctggcctcacaggggaccctgggctccaa
ggccctattggcctccaaggccccaaaggttcacctggtattcctggaaaagatggtcct
agtgggcttccaggcccacctgggacactcggtgatcctggtctccctggattacaaggc
cctccaggatttgaaggagttccagggaagcaaggcccctttgggaggcctgggataccc
gggcccagtgtgcaagtgggctacacattggtgaaacacagtcaatcggagcaggtgcca
cagtgccccatagggatgagtcaactgtgggtgggctacagtttgctgttcgtggaggga
caggagaaggcccataatcaggacctagggtttgctggctcctgcctgccccgcttcacc
accatgccctttatctactgcaacatcaatgaagtgtgccactatgccaggcgcaatgat
aaatcctactggctctctactactgcccccattcccatgatgcctgtcggccaggcccag
attcctcagtacatcagccgctgttctgtgtgtgaggcaccctctcaagccattgctgtg
cacagccaagacatcaccatccctcagtgccctctgggctggcgcagcctctggatcggg
tattccttcctcatgcacactgccgctggggctgaaggtggtggccagtccctggtttcc
ccaggctcgtgcctcgaggacttccgggctacacctttcatcgaatgcaacggtgcccta
ggcacctgccactactttgccaacaagtacagtttctggctgaccacagtggaggagaag
cagcagtttagggaagatcctgtgtctgagacgctgaaaactgggcagctacacacccgg
gtgagccgctgccaggtgtgtatgaaaagcctgtag
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