Dipodomys spectabilis (banner-tailed kangaroo rat): 122116370
Help
Entry
122116370 CDS
T07891
Symbol
Col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04151
PI3K-Akt signaling pathway
dsp04382
Cornified envelope formation
dsp04510
Focal adhesion
dsp04512
ECM-receptor interaction
dsp04820
Cytoskeleton in muscle cells
dsp04926
Relaxin signaling pathway
dsp04933
AGE-RAGE signaling pathway in diabetic complications
dsp04974
Protein digestion and absorption
dsp05146
Amoebiasis
dsp05165
Human papillomavirus infection
dsp05200
Pathways in cancer
dsp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122116370 (Col4a5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122116370 (Col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122116370 (Col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122116370 (Col4a5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
122116370 (Col4a5)
09154 Digestive system
04974 Protein digestion and absorption
122116370 (Col4a5)
09158 Development and regeneration
04382 Cornified envelope formation
122116370 (Col4a5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122116370 (Col4a5)
09162 Cancer: specific types
05222 Small cell lung cancer
122116370 (Col4a5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
122116370 (Col4a5)
09174 Infectious disease: parasitic
05146 Amoebiasis
122116370 (Col4a5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
122116370 (Col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dsp04147
]
122116370 (Col4a5)
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122116370 (Col4a5)
Exosome [BR:
dsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122116370 (Col4a5)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122116370 (Col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122116370
NCBI-ProteinID:
XP_042545975
LinkDB
All DBs
Position
Unknown
AA seq
1691 aa
AA seq
DB search
MKLRGVNLAAGLFLLALSLWGQPAEAAACYGCSPGSKCACSGVKGEKGEQGYPGVRGHPG
LPGFPGPEGPPGHQGQKGDDGIPGPPGPKGIRGSPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFSGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGRPG
IQGPAGPMGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGDPGDPGPPGPPGICGPPGPPGGVKGEKGEQGEPGKRGKP
GKDGENGQPGIPGLPGDPGYPGEPGRDGQKGQKGDTGPPGPPGLVIPTPGTGVIVGEKGN
PGLPGLPGEKGERGFPGVQGPPGLPGPPGTAVTGPPGPPGFPGERGQKGDNGPPGISIPG
SPGLDGQPGAPGLPGPPGPPGPYIPIRDELCKAGPPGSPGSPGDKGFPGEQGVKGDKGDT
CFNCIGTGISGPPGQPGLPGLPGPPGSLGIPGQKGEKGHAGATGPKGLPGIPGAPGAPGF
PGSKGDPGDILTLPGMKGEKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIAFKG
ERGPPGNPGLPGLPGNMGPMGPVGFGPPGPIGEKGMQGVPGNQGQPGIPGPKGDPGQTIT
QPGKPGLPGHPGRDGEVGLPGDPGLPGQPGFPGIPGSKGEPGSPGIGLPGPPGLKGFPGI
PGPPGAPGTPGRIGLEGPPGPPGIPGPKGEPGFGLPGPPGPPGLPGFKGTLGPKGDRGFP
GPPGSPGRTGLDGLPGPKGDIGPNGQPGPVGPPGLPGIGVQGPPGPPGIPGPIGQPGLHG
IPGEKGDPGPPGFDIPGPPGDRGSPGLPGAPGPVGPPGSPGLPGKAGASGFPGIKGEMGM
MGPPGPPGPLGIPGRSGIPGLKGDDGLQGEPGLPGPEGEKGGKGEPGLPGPPGPIDPSRL
GSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLIGQPGLPGPPGPKGNPGLPGQPGLI
GPPGLKGNLGDMGFPGPQGVDGPPGPPGVPGQPGSPGLPGQKGDKGDPGVSGIGLPGLPG
PKGEPGLPGYPGNPGTKGSVGDIGFPGLPGTPGAKGQPGLPGFPGTPGPPGPKGIIGPPG
NPGLPGEPGPVGGGGHPGPPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGL
SGQKGDGGSPGIPGNPGLPGPKGEPGFQGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPP
GRPGPTGFQGLPGPEGPRGLPGNGGIKGEKGNPGPPGQPGLPGLKGDQGPPGLPGNPGRP
GLNGMKGDPGLPGVPGFPGMKGPIGIPGSTGLEGEPGLTGPPGPPGLPGPSGQSIIIKGD
VGPPGVPGPPGLKGPPGLPGPQGLPGVTGPPGNPGRNGLPGFDGAGGRKGDPGVPGQPGS
RGLDGPPGPDGLQGPPGPPGSSSVAHGFLITRHSQTVDAPQCPHGTIQIYEGFSLLYVQG
NKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMNMEPLKG
QSIEPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWESLWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTR
ISRCQVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcgtggagtcaacctagctgccggcttgttcttactggccctgagtctttgg
ggacagccggcagaggctgcggcttgctatgggtgttctcctggatcaaagtgtgcctgt
agtggtgttaaaggggaaaagggagaacaaggatatccaggtgtaagaggccatccaggt
ttacctggatttccaggtccagaagggcctcctggacatcagggacaaaagggtgatgat
ggaattccagggccaccaggaccaaaaggaatcagaggatctcctggactacctggattt
ccagggacaccaggtcttcctggaatgccaggccatgatggagccccaggacctcaaggt
atccctggatgcaatggaaccaagggagaacgtggatttccaggcagtcccggtttttct
ggcttacagggacctccaggacctcctggtatcccaggtatgaagggggaaccagggagt
atcatcatgtcatcactgccaggaccaaaggggaacccaggatatccaggtcgtcctggg
atacaaggcccagctggccccatgggcataccagggccaattggtcccccaggaccacca
ggtttgatgggccctcctggcccaccaggactgccaggaccaaaggggaatatgggttta
aacttccagggacccaaaggtgaaaagggtgagcaaggtcttcaggggccacctgggcca
cctgggcaaatcagtgagcagaaaagaccaattgatgtagagtttcaaaaaggagatcag
ggagatcctggtgacccaggaccacctggacctccggggatttgtggccctcctggccct
cctggtggtgtgaaaggtgagaagggtgagcaaggagagccaggcaaaagaggtaaacca
ggcaaagatggagagaatggtcaaccaggaattccaggtttgcctggtgatcctggatac
cctggggaaccaggaagggatggtcaaaagggccaaaagggtgacactggtccacctggg
cctcctggcctggtaattcctacgcctggtactggtgtgattgtgggagaaaaaggaaat
cctgggttgcctggcttgcctggagaaaaaggagaaagaggatttcctggagtacagggt
ccacctggccttcctggacctccagggactgcagttacaggccctcctggtccccctggt
tttcctggagaaagaggccagaaaggtgataacggtccacctggaatttcgattcctgga
tctcctggacttgatggacaacctggggctcctggccttccagggcctcctggccctcct
ggcccctatatcccaattcgtgatgagctatgtaaagcaggcccaccaggctccccagga
tctccaggtgataaaggatttccaggagaacaaggagtaaaaggtgataaaggagacacc
tgcttcaactgtattggaactggtatatcgggacctccaggacaacctggtttaccaggt
ctcccaggtcctccaggatctcttggcattcctggacagaagggtgaaaagggacatgca
ggagcaactggtccgaaaggattaccaggcataccaggagcaccaggtgctccaggcttt
cctggatctaaaggtgatcctggtgacatcctcactcttccaggaatgaagggtgaaaag
ggagagctgggatcccctggagctccagggcttccaggtttacctggcactccaggacag
gatggattgccagggcttcctgggcccaaaggagagcctggtggaattgcttttaagggt
gaaagaggtccccctggaaatccaggcttgccaggtctcccagggaatatgggccctatg
ggcccagttggttttggccctccaggcccaataggtgaaaaaggcatgcaaggtgttcca
ggaaatcaaggccaaccaggaattccaggtcctaaaggtgatccaggtcagaccataacc
cagccaggaaagcctggtctgcctggtcatccaggtagagatggtgaagtaggtcttcca
ggcgaccctggacttccaggccaaccaggattcccaggaatacctggtagcaaaggagaa
ccaggtagccctggaattggacttcctggaccacctggtctcaaaggttttccaggaatt
ccaggacctcccggagctcctgggacacctggaagaattggtttagaaggccctcctggg
ccaccaggcattccaggaccaaagggagagccaggatttgggctacctggaccacctggg
ccaccaggactcccaggtttcaaaggaacacttggtccaaaaggtgatcgtggttttcca
ggacctccaggttctcccggacgcactggcttggatggcctacctggaccaaaaggtgat
attggaccaaatggacaacctgggccagtagggcctcctggactgccaggaattggtgtt
cagggaccaccaggaccaccaggaattcctggaccaataggccagcctggcttacatgga
atacctggagagaagggagatccaggacctcctgggtttgatattccaggtcctcctggt
gatagaggcagtccagggctccctggagctcctggccctgtaggacctccaggatcacca
ggcctcccaggaaaagcaggtgcctctggatttccaggtattaaaggagaaatgggtatg
atgggacctccaggcccaccaggacctttgggaattcccggtaggagtggtattcctggc
ctaaaaggtgatgatggcttgcagggtgagccaggacttcctggccctgaaggagaaaaa
ggtggaaaaggagagcctggccttccaggcccccctggaccaatagatccaagtcgcttg
ggctccaaaggagagaagggggaacctggtttaccaggtattcctggactttctgggcca
aaaggctaccagggattgcctggagacccagggcaaccaggactgattggacaacctgga
ttaccaggacctccaggtcccaagggtaaccctggtctccccggccagccaggacttata
ggacctcctggacttaaaggaaatcttggtgatatgggtttcccaggccctcagggtgtg
gatgggccccctgggcctcctggagttcctggacagcctggctctccaggattacctgga
cagaaaggagataaaggtgatcctggtgtttcaggaattggtcttccaggtcttcctggc
ccaaagggtgagcctggtctgcctggatacccagggaacccaggtactaaaggatctgtg
ggagatattggctttcctggattaccagggacacctggagctaaagggcagccaggactg
cctggattcccaggaaccccaggccctcctggaccaaagggtattattggtcctcctggg
aaccctggtcttccgggagaacctggtcctgtaggtggtggaggccaccctgggccacca
ggacctccaggtgaaaaaggcaaaccaggtcaagatgggattcctggaccagcaggacag
aagggtgaaccaggtcaaccaggctttggaatcccaggaccccctggacttccaggactt
tctggtcaaaagggtgatggaggatcacctggtattccaggaaatcctggccttccaggt
ccaaaaggtgaaccaggctttcagggttttcctggtgttcagggtccccctggcccacct
ggttctcctggtccagctctggaaggtcctaaaggcaaccctgggccccaaggtcctcca
ggaagaccaggtcctacaggttttcaaggtctaccaggtccagaaggtccacggggtctc
cctggaaatggaggtattaaaggagagaagggaaacccaggcccacctgggcaacctggc
ttgcctggcttgaaaggagatcaaggaccaccaggactcccgggtaaccctggccgacca
ggtctcaatggaatgaaaggagatcctggactccctggtgttccaggattcccaggcatg
aaaggacctattggaatacctggttcaactggtcttgagggtgaaccaggacttactggc
ccaccaggtcctcctgggttacctggtccttcaggacagagtattataatcaaaggagat
gttggtcctccaggggttcctggtccacctgggttaaaaggtccaccaggattaccgggc
cctcaaggtttaccaggtgttactggcccaccaggaaatcctggacgtaatggactccct
ggttttgatggtgctggagggcgcaaaggagacccaggtgtgccaggacagcccggttcc
cggggtttggatggtcccccagggccagatggactgcaaggtcctccaggtccccctgga
agttcttctgttgcccatggattcctcatcacacgtcacagccagacagtagatgcacca
caatgcccacatggaacgatccagatctatgaaggtttttctctcttgtatgtgcaagga
aacaaaagagcccacggccaagatttgggaactgctggcagctgccttcgtcgattcagt
accatgcctttcatgttctgcaatatcaataatgtttgcaactttgcttcaagaaatgac
tactcttattggctctccaccccaaaacctatgccaatgaacatggaacctctgaaaggc
cagagtatcgagccatttattagtagatgtgcagtatgtgaagctccagctgtggtgatt
gcagttcacagtcagaccatccagattccccactgtcctcaaggatgggaatctctgtgg
atcggttattcctttatgatgcatacaagtgcaggggcagagggctcaggacaagccttg
gcctctcctggttcctgtttggaagagttccgttctgctcctttcatcgaatgtcatggg
cgaggaacttgtaattactatgccaactcctatagcttttggctggcaactgtagatgtg
tcagatatgttcagtaaacctcagtcagaaacactgaaagcaggagacttgaggacacgt
attagccggtgtcaagtgtgcatgaagaggacatag
DBGET
integrated database retrieval system
