Dipodomys spectabilis (banner-tailed kangaroo rat): 122116858
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Entry
122116858 CDS
T07891
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122116858 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsp03021
]
122116858 (Polr1a)
Enzymes [BR:
dsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122116858 (Polr1a)
Transcription machinery [BR:
dsp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122116858 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
122116858
NCBI-ProteinID:
XP_042546359
LinkDB
All DBs
Position
Unknown
AA seq
1714 aa
AA seq
DB search
MLVSKNLPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDGLGNPSGNGLYDLALGPADS
KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
VCQLRVLEVGALQAVYELERILNRFLEENADPSATEIQEELEEYTTQILQNNLLGSQGAH
VKNVCESRSKLIAYFWKTHMTAKRCPHCKTGRSLVRKEHNSKLTVMYPAVVHKKSDQKDT
EDPASGIEEAQMGKRGYLTPSSAEEHLFAIWKNEGFFLNYLFSGLAVGTEARFNPSMFFL
DFVVVPPSRYRPVNRLGDQMFTNGQTVNLQAVIKDVVLIRKLLALMAQEQKLPCEVVALT
TDKENDSSIAMDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQ
ILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQE
LRQAVINGPNVHPGASMVINEDGSRTALSSVDITQREAVAKQLLTPATGAPKPQGTKIVC
RHIKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP
QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYR
GLTDKVGRVKLLPPAILKPFSLWTGKQVVSTLLINIIPDDYIPLNLTGKAKISGKAWVKE
TPRPVPDFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLT
CLARLFTAYLQLYRGFTLDVEDILVKPKADVKRQQIIEESTHCGPRAVRVALNLPEAASC
DEVRGKWQDAHLGKDQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQ
SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI
RPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY
GEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKALRHFRAIKKWHSKH
STAQLRKGAFLNYSQKMQAAVKALNLEGKNQNGRSPETQQMLQMWYELDEQSRWKYQKKA
ASCPDPSLSVWRPDIYFASVSETFEKKMDDYSQERAAQAEKNYMKSELSLDRLRTLLQLK
WQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANI
KTPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLQKVDVQESFCMGEKQNKFRVYELRF
EFLPHAYYQQEKCLRPEDILHFMETRFFKLLMECIRKKSSKESTFRSVNTRRATQKDLDN
AEESGRARGEQEGDEEEEGNIVDAEADEGDTDASDTKRKEKQEEEVDYESEEEEEKEEEE
EEEETPEEGNIHGEGGALQAHGSDEEVGSGLEEDLPQKPPRHHRGPQGAEAVQRRVQAVR
EAHSFIEDYQYDTKEGLWCQVTMKLPLMKINFDMSSLVVSLAHSAIVYTTKGITRCLLNE
TTNSENEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIK
DVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSSSSPLQQMTFETSFQFLKQATM
MGSHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgttggtctccaagaacctgccttggcggcggctgcaaggcatttccttcggcatgtat
tcggctgaggagctcaagaaattaagtgttaaatccattacgaaccctcgttatgtggac
ggtctaggaaacccatccggaaatggtctctatgatttagccttgggccctgcagattcc
aaggaagtatgctccacctgcgtgcaggacttcagcaactgctctgggcacctgggccac
attgagcttccactgacagtgtataaccctctcctctttgataaactctacctgttgctc
cgaggctcctgtttaaattgccacatgctgacttgtccccgggctgtaattcacctattg
gtctgccagctaagagttctggaagttggggccctacaagcagtctatgagcttgaacga
attctgaacaggtttctggaagaaaatgctgatccttctgccactgaaattcaggaagag
ttagaagaatacacaacccaaattctgcaaaacaacctcttggggtcccaaggtgcacat
gtaaaaaatgtgtgtgaaagcaggagcaaactcattgcttacttctggaagacacatatg
actgctaagcgatgtccccactgcaagactgggcggtcacttgtccgaaaggagcacaac
agtaagctgacagtcatgtacccagctgtggtgcacaagaaatctgaccagaaggacaca
gaggatccagcttcaggaattgaggaagctcagatgggaaaacgagggtatttaacacct
agcagtgccgaagaacatctttttgccatttggaagaatgaaggattctttttgaattac
ctcttttctggacttgctgtgggcacagaagcgagattcaatcccagtatgttttttctt
gattttgtggtggtgccaccctccaggtatcgtcccgtcaatcgcctgggggaccaaatg
tttaccaatggccagactgtgaacctgcaagctgtcataaaagacgtagttctaatccga
aaacttctggcattgatggcccaagaacagaagctgccctgtgaggttgtagcactcacc
acagacaaggaaaatgactcttcaattgctatggaccgatcctttttaagtatgcttcca
ggccagtctctcacagacaagctttataacatttggattcgacttcagagccatgtcaat
atcgtgtttgatagcgagatggataaattaatgatggaaaagtaccctggcattagacag
atcctggagaagaaggaaggacttttccgaaagcatatgatgggaaagcgagtagattat
gcagcacgctcagtcatctgcccagatatgtacatcaacaccaatgaaattggcattccc
atggtgtttgccacaaaattgacctaccctcagccagttaccccctggaatgtccaggaa
ttgaggcaagcagtcattaatggccccaatgtgcatccaggagcctccatggtcatcaac
gaggatggcagtcgcacagctctaagctctgtggacataacccagcgggaagctgtggct
aaacagcttctgacaccagccaccggggccccgaagccccaggggacaaaaattgtttgc
cggcacataaagaatggagacattcttctactgaaccgacagcccaccctgcatagacca
tccatccaggcccaccatgctcgtatcctacctgaagagaaagtccttcggctccactat
gccaattgcaaggcctataatgctgactttgatggagatgagatgaacgcccacttccct
cagagtgagctgggtcgagcagaggcctatgtcctggcctgtactgatcaacagtacctt
gttcccaaggatggccagccattggcaggactgatccaagatcacatggtctcaggtgca
aacatgactattcggggttgctttttcacccgagaacagtatatggagctggtataccga
ggactcacagacaaagtaggacgcgtgaagctccttcctcctgccattctgaagcccttt
tcactgtggactggaaagcaggttgtatcaacactgctcataaacataatcccagacgac
tacattccactgaacttaactggaaaggctaaaatcagtgggaaagcctgggtgaaagaa
actcctcggcctgttcctgactttaaccctgactccatgtgtgagtctcaggtgatcatc
agggaaggggagctgctctgtggagtgctggacaaggcgcactatgggagctctgcctac
ggcctagtccactgctgctatgagatctatgggggtgagaccagtggcaaggttcttacc
tgcttggctcgtctcttcactgcctaccttcagctctacagaggatttaccttggatgtg
gaagacattttggttaagccaaaggcagatgttaagagacagcagatcattgaagaatcc
actcactgcggacctcgggctgtcagggttgcgttgaacctaccagaagctgcatcatgt
gatgaggtccgtgggaaatggcaggatgcacaccttggcaaagaccagcgggattttaac
atgattgatatgaagttcaaggaggaagtgaaccattacagcaatgagattaacaaggca
tgcatgccttttggcctgcacagacagtttccagagaacaacctacagatgatggtgcag
tctggagccaaaggttcaactgtgaacacgatgcagatctcttgcctgctgggacagatt
gagttggaaggccggagacctccactgatggcatctggcaaatcattgccctgctttgaa
ccttatgaattcacccccagggctggtggctttgtcactggaaggtttctcacaggtatt
agacctccggagttcttctttcactgcatggcagggcgagagggcctagtagatactgct
gtgaaaaccagccgttctggctatctccaaaggtgtatcatcaagcacttggaaggcctg
gttgtccagtatgatctgacagtccgtgacagcgatggcagcgtggtgcagttcctatat
ggggaagatggcctggatatccccaagacgcagttcttgcagcccaagcagtttcccttc
ctggccagcaactatgaggtgataatgaaatcaaagcatctccatgaagttttgtccaga
gcagatcctcagaaagctctccgtcacttcagagccattaaaaaatggcacagcaagcat
tccactgcccagctaagaaaaggtgccttcctgaattactcccagaagatgcaggcagct
gtgaaagccttgaacctcgagggcaagaaccagaatggccgcagcccagaaactcaacag
atgttacagatgtggtatgagttggatgaacagagccggtggaaataccagaagaaagca
gcctcttgtcctgaccccagtctgtctgtgtggcgcccggacatctactttgcatctgtc
tcagaaacatttgaaaaaaagatggatgactacagtcaagaaagggcagctcaagcagag
aagaattacatgaaatcagagctttctctcgacaggctgagaaccttgctgcagctaaaa
tggcagcgctcactgtgtgacccaggcgaggctgtgggactgctggctgcccagagcatt
ggggagccctccacacagatgactctgaacaccttccacttcgcaggcagaggcgagatg
aacgtcaccctgggtattccaaggttaagggagattctcatggtggctagtgccaacatc
aagacacccatgatgagtgtccccgtcttcaacaccaagaaagccctgaagagagtgaag
agcctgaagaagcagctcaccagggtgtgcctaggggaggtgttgcagaaagttgatgtc
caggagtccttctgcatgggggaaaaacagaacaaattccgggtgtatgagctgaggttt
gagttcctgccgcatgcctattaccaacaggagaagtgcctgagacctgaggacatcctg
catttcatggaaacgagattctttaaactcctgatggagtgcatcagaaagaagagtagt
aaagaatcgaccttcagaagtgtgaacacacgaagagctacacagaaggatcttgataat
gctgaggagtcagggagggctcggggagaacaggaaggtgatgaggaagaagaggggaac
attgtggatgctgaggctgatgagggggatactgatgcctctgacactaaacgcaaggag
aagcaagaggaagaggtggattatgagagcgaggaagaggaagagaaggaagaggaggag
gaggaggaggaaacaccagaagaagggaacatccatggtgaaggtggtgcccttcaggcc
catggttcagatgaggaagtgggctcaggcctggaagaagacttgccccagaaacctccc
cgccaccaccggggaccccagggagctgaggctgtgcagcgccgggtccaggctgtgcgt
gaggcccattcattcattgaagactaccagtatgacaccaaagaaggactgtggtgccag
gtgacgatgaagctccctctgatgaagattaactttgacatgagctccctggtggtgtcc
ttggcccacagtgccattgtttacacaaccaagggcatcactcggtgcctcctgaatgaa
acaactaacagtgagaatgagaaggagcttgtgctgaacacagaaggaatcaacctccca
gagctgttcaaatacgctgaggtgctggacctgcgccgcctctactccaatgacatccat
gccatggctaacacttatggcatcgaggcagcactgcgggttatcgagaaggagatcaag
gatgtgtttgccgtgtatggcattgcagtcgatcctcgccatctctccttggttgctgat
tatatgtgttttgagggtgtttacaagccactgaatcgcttcgggatccggtccagctcc
tcccctctgcagcagatgacgtttgaaaccagcttccagtttctgaagcaggccaccatg
atgggatcccacgatgaactgaggtccccttcagcctgccttgtggtggggaaagttgtc
aaggggggaactggcctgtttgaactcaagcagcccctgagatag
DBGET
integrated database retrieval system
