Dipodomys spectabilis (banner-tailed kangaroo rat): 122116894
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Entry
122116894 CDS
T07891
Symbol
Usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122116894 (Usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dsp03041
]
122116894 (Usp39)
Spliceosome [BR:
dsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
122116894 (Usp39)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
122116894
NCBI-ProteinID:
XP_042546409
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All DBs
Position
Unknown
AA seq
568 aa
AA seq
DB search
MSGRSKRESRGSARGKRESESRGSSSRVKRERDREREPEAAGSRGSPVRVKREVKPASAR
EAPQLPPAAVPPVRVKREREADEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLD
FDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPD
NYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYAN
AVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPH
EMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFT
KKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFN
ILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITN
VDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDI
LPQMITLSEAYIQIWKRRDNDETNQQGA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtccggccgatccaagcgggagtctcgtggttccgcccgcgggaagcgcgagtccgag
tcgcggggcagctcgagtcgggtcaagcgggagcgagaccgggagcgggagcccgaggcg
gcaggctcccggggcagcccggtgcgcgtgaagcgcgaggtcaagccggcgagcgcgcgc
gaggcgccgcagctgccgcccgcggccgtcccgcccgtgcgggtgaagcgcgagcgcgag
gccgacgaggactcggagcccgagcgggaggtgcgagcaaagaatggccgtgttgattct
gaagaccggaggagccgccactgcccatacttggataccattaacagaagtgtgctggac
tttgactttgagaagctgtgttctatttccctctctcatatcaatgcttatgcctgtctg
gtatgtgggaaatactttcaaggccgaggtttgaagtctcatgcctacatacacagcgtc
caattcagccaccatgtcttcctcaatctccataccctcaagttttattgccttccagat
aactatgagatcattgattcctccctggaggatatcacgtatgtgttgaaaccaactttc
acaaaacaacaaattgcaaacttggacaagcaagccaaattgtctagggcgtatgatggt
actacctacctgccgggtattgtgggactgaataacataaaggctaacgattatgccaat
gctgttcttcaggctctgtcaaatgttcctcctctccgcaactacttcctggaagaagac
aattataagaacatcaagcgtcctccgggggatatcatgttcttattggttcagcgtttt
ggagaactgatgagaaagctctggaacccacgaaatttcaaggcacatgtctctccccat
gagatgcttcaagctgttgtcctttgtagcaagaagacttttcagattaccaagcaaggg
gatggagttgacttcctgtcttggtttctgaatgctctgcactcagctctggggggcaca
aagaagaaaaagaagactattgtgactgatgttttccaggggtccatgcggatcttcact
aaaaagctcccccaccctgatttgccagcagaagaaaaagagcagctgctccataatgat
gagtaccaggagacaatggtggagtccaccttcatgtacctgacgctggaccttcctact
gccccactctacaaggatgaaaaggagcagctcattatcccccaggtgccactcttcaac
atcctggccaagttcaacggcatcactgagaaggaatataagacttacaaagagaatttt
ttgaagcgcttccaactcaccaaactgcctccatatctaatcttttgtattaagagattc
actaagaacaacttctttgtggagaagaatccaactattgtcaacttccctatcacaaac
gtggatctgagagaatacctgtctgaagaagtacaagctgttcacaagaataccacctat
gacctcattgccaacatcgtgcatgacggcaagccctctgagggctcctaccggatccat
gtgctccaccatgggactggcaaatggtacgagttacaagacctccaggtgactgacatc
ctgcctcagatgatcacactgtcggaggcatacattcagatttggaagaggcgggataat
gatgaaaccaaccagcagggggcttga
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