Dipodomys spectabilis (banner-tailed kangaroo rat): 122117104
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Entry
122117104 CDS
T07891
Symbol
Chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsp03021
]
122117104 (Chd1)
03036 Chromosome and associated proteins [BR:
dsp03036
]
122117104 (Chd1)
Transcription machinery [BR:
dsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122117104 (Chd1)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
122117104 (Chd1)
SLIK complex
122117104 (Chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
122117104
NCBI-ProteinID:
XP_042546648
LinkDB
All DBs
Position
Unknown
AA seq
1712 aa
AA seq
DB search
MNGQSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGS
QSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQQQHPASSNS
GSEEDSSSSEESDDSSSAVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETES
DYEPKNKVKSRKPPSRSKSKNGKKLLGQKKRQIDSSEDDDDEEDYDNDKRSSRRQATVNV
SYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEAD
GDPNAGFDKNKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETI
RWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSE
CSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPCYIGGHEGLE
LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLS
TLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDK
AFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI
MPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSA
LQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEAL
QHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKG
ELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR
IGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPF
NKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFK
VANFSNMDEDDIELEPERNSKNWDEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQI
SFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKK
FGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP
TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIQCHTKAAHFDIDWGKEDDSN
LLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDLAKK
EAMRLSGAGGSKRKKARAKKNKVMKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSENK
ERSKKSSMSDAPVHITASGEPVPISEESEVLDQKTFSICKERMRPVKAALKQLDRPEKGL
SEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYK
HAIKKRQESQQNNDQNSNLNAHVIRNPDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHK
DRHQGDSYKKTDSRKRPYSSFSNGKDHREWDHYKQDSRYYSEREKHRKLDDHRSRDHRST
LEGSLKDRSHSDHRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHSDWQMDHRASSSGPRSP
LDQRSPYGSRSPFEHSVEHKSTPEHTWSSRKT
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacagagtgatgaagaaagtgtgagaaacagtagtggagaatcaagccagtcg
gatgatgattctgggtcagcttcaggctcgggatcaggttcaagttctggaagcagtagt
gatggaagcagtagccagtcaggtagcagtgactctgactctggatctgactcaggcagt
cagtcagaatctgagtcagatacatcccgagaaaacaaagttcaagccaaaccaccgaaa
gttgatggagcagagttttggaaatctagccctagtattttggctgttcagagatctgca
atgctcaagaagcagcagcagcagcagcaacagcagcaacatccagcttcatctaatagt
ggatcagaagaggattcctctagtagtgaagaatctgatgattcatcaagtgccgtcaaa
aggaaaaagcataaagatgaagattggcagatgtctgggtcaggatctccatctcagtct
ggttcagattcagaatctgaagaagaaagagagaaaagtagttgtgatgaaacagaatct
gattatgagccaaaaaacaaagtcaaaagcagaaaacctccaagtagatctaagtcaaaa
aatggaaaaaagcttcttggacaaaaaaagagacagattgattcatctgaagatgatgat
gatgaggaagattatgataatgacaaaagaagttctcgtcgacaagccactgtcaatgtt
agctacaaggaagatgaagaaatgaaaacagattctgatgacctactggaagtctgtgga
gaggatgttcctcaacccgaggaagaggaatttgaaacaatagaaaggtttatggattgt
cgtattgggagaaaaggagctactggtgctactacaaccatatatgcagttgaagcagat
ggtgaccccaatgcaggatttgacaaaaacaaggaaccaggagacatccagtatttaatt
aaatggaaaggatggtcccatatccacaacacttgggagacagaagaaactcttaagcaa
caaaacgttagaggaatgaaaaaattggataattataagaaaaaagatcaggaaacaata
cgatggttgaaaaatgcttcaccagaagatgtggaatactataattgccagcaagaactt
acagatgatctacataaacagtatcaaatagtggagcgtataattgctcattccaatcaa
aagtcagcagctggttatcctgattattattgcaaatggcagggccttccatattcagag
tgcagctgggaagatggagctctcatttcaaaaaagtttcaagcatgtattgatgagtat
tttagcagaaaccaatcaaaaaccactccttttaaagattgtaaagtattaaaacaaaga
ccaagatttgtcgcactgaagaagcagccatgctatattggaggacatgaaggtttagaa
ttaagagattatcagctgaatggtttaaattggcttgctcactcttggtgcaaaggaaat
agttgtatacttgctgatgaaatgggccttggaaaaacaatacagacgatctcatttttg
aactacttgtttcatgaacatcagttgtatggaccttttctactagttgttccactttct
actttaacttcctggcaaagggagattcagacgtgggcttctcaaatgaatgctgtcgtt
tatttaggtgacattaatagcagaaacatgataagaactcatgaatggatgcatccccag
accaaacggttaaaatttaatatacttttaacaacttatgagattttactgaaggataag
gcattccttggtggtctaaattgggcatttataggtgttgatgaagcacatcgattaaaa
aatgatgattcccttctatataaaactttaatagattttaaatctaatcatcgcctcctt
atcactggaacaccgctacaaaactccctcaaagagctgtggtcattgctacatttcatt
atgccagaaaagttttcttcttgggaagattttgaagaagaacatggaaaagggagagaa
tatggttatgcaagcctccacaaggagctggagccatttttattacgtcgcgttaagaaa
gatgtagaaaaatctcttcctgccaaggttgagcagattttaagaatggaaatgagtgct
ttacagaaacaatactacaaatggattttaactaggaattacaaagccctcagcaaaggt
tctaagggcagtacctcaggctttttgaacattatgatggagctaaagaaatgttgtaac
cattgctacctcattaagcctccggataataatgaattctataataaacaagaagcctta
caacacttaatccgtagtagtggaaaattgatccttcttgataaattgttaattcgtcta
agagaacggggcaatcgagtattaattttttctcaaatggtgcggatgttggatatactt
gcagaatatttaaaatatcgtcagtttccttttcaaagattagatgggtcaataaaagga
gaactgaggaaacaagctctagatcatttcaatgctgagggatcagaggatttctgcttt
ttgctttctacaagagctggaggtttagggattaatttagcctctgctgacactgttgtt
atatttgattccgactggaatccacaaaacgatcttcaggcacaggcaagagctcaccga
attgggcaaaaaaaacaggtgaatatataccgtctagtaacaaagggatcagttgaagaa
gatattcttgaaagggccaaaaaaaagatggttttagatcatcttgtgattcaaagaatg
gacacaactgggaagacagtactacacacaggttctgctccatcaagttctactcctttc
aataaagaagaattatcagccattttgaagtttggtgctgaggaactttttaaggaacct
gaaggagaagaacaagagccccaggaaatggatatagatgaaatcttgaagagggctgaa
acacatgagaacgaaccaggccctttaactgtaggagatgagttactttcccagtttaag
gttgccaatttttcaaacatggatgaagatgacattgaattagaacctgaaaggaattca
aagaactgggatgaaatcattccagaagatcaaagaagacgattagaagaggaagaaagg
caaaaggagcttgaggaaatctatatgcttccacgaatgagaaattgtgcaaaacagatt
agtttcaatggaagtgaagggaggcgcagtagaagtagaaggtactctggatctgatagt
gattcaatctcagaaaggaaaaggccaaagaaacgaggaagaccacgcactatccctcgt
gaaaatattaaaggatttagtgatgcagaaattaggcggtttatcaagagttataagaaa
tttggtggccctctggaaagattagatgcaatcgctcgagatgctgagctagttgataag
tcagaaacagaccttagacgactaggagaattggtacacaatggttgcattaaagcttta
aaggatagttcttcaggaacagaacgaacaggtggtagacttggaaaagtgaagggtcca
acattccgaatatcaggagtacaagtgaatgctaagctagtcatctcccatgaagaagaa
ttaatacctttgcacaaatctattccttcagatccagaagaaagaaagcagtatacaatc
caatgtcacacaaaagctgctcattttgatatagactggggcaaggaagacgattccaat
ttattaattggtatttatgagtatggctatggaagttgggaaatgattaaaatggatcca
gatctcagtctaacacacaagattcttccagatgatcctgataaaaaaccacaagcaaaa
cagttgcagacacgtgcagactacctcatcaaattacttagtaaagaccttgcaaaaaaa
gaagctatgagactttctggtgcaggaggttccaagaggaaaaaagcaagagctaagaag
aataaagtgatgaagtccataaaagtaaaagaggaaataaagagtgattcttctcccctg
ccgtcagagaagtctgatgaagatgatgataaattgagtgaatccaaatctgaaaataag
gagcgatccaaaaagtcttcaatgtcagatgctccagttcatatcactgcaagtggtgaa
ccagttcccatatcagaagaatctgaagtccttgatcagaagacatttagcatttgtaaa
gaaagaatgaggcctgtgaaagcagctttgaaacaacttgatagacccgaaaaaggcctc
tcagaaagagaacagctggaacatactagacaatgtttaataaaaattggagaccatatc
acagaatgtctgaaagagtatacaaatcctgaacaaattaagcagtggagaaaaaacctg
tggatttttgtatctaagtttactgaatttgatgcaagaaaattacataaattatataag
catgctattaaaaagcggcaagaatctcagcaaaacaatgaccagaacagcaacttgaat
gctcatgtgattagaaatccagatgtagaaaggttaaaagagaatacaaatcatgatgac
agcagcagggacagttattcttctgatagacacttatctcagtaccatgatcatcacaaa
gaccggcaccaaggagattcttataaaaagactgattctaggaaaagaccctattcttca
tttagtaatggtaaagatcatcgtgaatgggatcactacaagcaagacagcaggtactac
agtgagagagaaaaacacagaaagctggatgatcacaggagtagagatcacaggtcaact
ttggaaggaagtttaaaggatagatctcattctgaccatcgatctcattcagatcatcgg
ttacattcagatcaccggtcaagttctgaatacacgcatcataaatcttccagggattat
aggtatcactcagattggcaaatggaccacagagcttccagtagtggccccaggtcacca
ctagatcagcggtctccttatggctccagatctccgtttgaacattcagttgaacacaaa
agtacacccgagcatacctggagcagtaggaaaacataa
DBGET
integrated database retrieval system
