Dipodomys spectabilis (banner-tailed kangaroo rat): 122117125
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Entry
122117125 CDS
T07891
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122117125 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122117125 (Mtrex)
03041 Spliceosome [BR:
dsp03041
]
122117125 (Mtrex)
03009 Ribosome biogenesis [BR:
dsp03009
]
122117125 (Mtrex)
03016 Transfer RNA biogenesis [BR:
dsp03016
]
122117125 (Mtrex)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122117125 (Mtrex)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122117125 (Mtrex)
Spliceosome [BR:
dsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122117125 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
122117125 (Mtrex)
Ribosome biogenesis [BR:
dsp03009
]
Eukaryotic type
Pre-60S particles
Helicases
122117125 (Mtrex)
Transfer RNA biogenesis [BR:
dsp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122117125 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
122117125
NCBI-ProteinID:
XP_042546686
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTPAAGTKKDKEKEKGKWKGLPVSSDKAGKRFDVKLQPESTNSG
KNKRDADFEGTEELIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSIRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAVDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEESYLN
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggacgagctgttcagcgtgttcgaggacgactcgactccggct
gcaggaaccaagaaagacaaagaaaaagagaaggggaaatggaaaggactgccagtgtct
tcagacaaggccgggaaacgttttgatgtcaagttacaaccagagtcaactaatagtgga
aaaaacaagagagatgcagattttgaaggcacagaagaacttatttttggaaagaagccc
aggatagaagagtcaataactgaagacttaagtttggcagacctgatgccccgagtcaag
gtacagtcagttgaaactgttgaaggatgtacacacgaggttgctcttcctgcagatgag
gattatttaccactgaaaccacgagttggaaaagcagcaaaggaatatccatttattctt
gatgctttccaaagagaagccattcagtgtgttgataataaccagtctgttttggtatct
gcgcatacatcagcaggaaaaactgtatgtgccgaatatgctattgcactagccttgcgg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaatcagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgactacagagattttgagaagtatgctgtatagaggttct
gaagttatgcgagaagttgcctgggtcatatttgatgaaattcattatatgagagattca
gaacgtggtgttgtatgggaagaaacaattattttgcttcctgataatgttcattatgtc
tttctttctgctactattccaaatgctcgacagtttgctgaatggatttgccatttacat
aaacagccctgtcatgtaatttacacagattatcggcctactccattgcagcactacatt
tttccagcagggggagatggtcttcaccttgttgttgatgaaaatggtgactttagagaa
gataattttaatactgcaatgcaagtgcttcgagatgctggtgatctggcaaaaggagat
cagaagggaaggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaatttccaacctgtaattattttcagttttagtaaaaaagattgtgaa
gcttacgctcttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgattgtttatctgatgaagataaaaagctccctcag
gttgagcatgtacttcctcttttgaaacggggaattggtattcaccatggtggtttgctt
ccgattttgaaagaaaccatagaaatactcttttctgaaggcctgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagccagaactgtgttgtttacaaat
gctcgtaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattctcatggtagat
gaaaagatgagcccaacaattggaaaacagctacttaagggttcagctgatccactaaat
agtgctttccatttgacctacaatatggttttgaatttattgcgtgtagaagaaattaat
cctgagtatatgctagaaaaatctttctaccagtttcagcattatagagccattccaggt
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaattcccaatgaa
gaaagtgtagtcatctattacaagattagacagcagcttgccaaactaggtaaagagatt
gaagaatatattcataaacctaaatattgcttaccatttctacagcctggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtaaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaggagagtttgaagaattcagctactgaggctgcaaaaccagctaaaccc
gatgagaagggagagatgcaggttgttccagttttggtgcatctcctttctgctatcagc
agcattaggctttacattcctaaagaccttcggccagtggacaatagacagagtgtctta
aaatcaatacaggaggttcagaaacgttttcctgatggtgtgccattgttagatcccatt
gatgacatgggcattcaagatcaagggctaaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatcccaatttggaaactgtatataca
ctttgtgaaaaaaaagctcagattgcagtagatattaaatctgcaaagcgggaactgaaa
aaagcaagaacggtcctacaaatggatgagcttaaatgtcgaaaacgtgttttaagaagg
ttgggctttgctacttcctctgatgtcatagagatgaaaggacgggtggcctgtgagatc
agcagtgctgatgaactccttctcactgagatgatgtttaatggcctttttaatgacctt
tctgcagaacaagcaactgcattattaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagaacagttagctggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagcaaaattggaaattgatgaggaaagttatctaaac
tcattcaaacctcacttgatggatgtggtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaattgcttcgacaaatgtgtcaggcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagcgagatatcgtgtttgctgccagcctc
tacttataa
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