KEGG   Dipodomys spectabilis (banner-tailed kangaroo rat): 122117125
Entry
122117125         CDS       T07891                                 
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122117125 (Mtrex)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsp03019]
    122117125 (Mtrex)
   03041 Spliceosome [BR:dsp03041]
    122117125 (Mtrex)
   03009 Ribosome biogenesis [BR:dsp03009]
    122117125 (Mtrex)
   03016 Transfer RNA biogenesis [BR:dsp03016]
    122117125 (Mtrex)
Enzymes [BR:dsp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     122117125 (Mtrex)
Messenger RNA biogenesis [BR:dsp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     122117125 (Mtrex)
Spliceosome [BR:dsp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    122117125 (Mtrex)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    122117125 (Mtrex)
Ribosome biogenesis [BR:dsp03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    122117125 (Mtrex)
Transfer RNA biogenesis [BR:dsp03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    122117125 (Mtrex)
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C DEXQc_Suv3 ResIII nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 122117125
NCBI-ProteinID: XP_042546686
LinkDB
Position
Unknown
AA seq 1042 aa
MADAFGDELFSVFEDDSTPAAGTKKDKEKEKGKWKGLPVSSDKAGKRFDVKLQPESTNSG
KNKRDADFEGTEELIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSIRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAVDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEESYLN
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq 3129 nt   +upstreamnt  +downstreamnt
atggcggacgctttcggggacgagctgttcagcgtgttcgaggacgactcgactccggct
gcaggaaccaagaaagacaaagaaaaagagaaggggaaatggaaaggactgccagtgtct
tcagacaaggccgggaaacgttttgatgtcaagttacaaccagagtcaactaatagtgga
aaaaacaagagagatgcagattttgaaggcacagaagaacttatttttggaaagaagccc
aggatagaagagtcaataactgaagacttaagtttggcagacctgatgccccgagtcaag
gtacagtcagttgaaactgttgaaggatgtacacacgaggttgctcttcctgcagatgag
gattatttaccactgaaaccacgagttggaaaagcagcaaaggaatatccatttattctt
gatgctttccaaagagaagccattcagtgtgttgataataaccagtctgttttggtatct
gcgcatacatcagcaggaaaaactgtatgtgccgaatatgctattgcactagccttgcgg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaatcagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgactacagagattttgagaagtatgctgtatagaggttct
gaagttatgcgagaagttgcctgggtcatatttgatgaaattcattatatgagagattca
gaacgtggtgttgtatgggaagaaacaattattttgcttcctgataatgttcattatgtc
tttctttctgctactattccaaatgctcgacagtttgctgaatggatttgccatttacat
aaacagccctgtcatgtaatttacacagattatcggcctactccattgcagcactacatt
tttccagcagggggagatggtcttcaccttgttgttgatgaaaatggtgactttagagaa
gataattttaatactgcaatgcaagtgcttcgagatgctggtgatctggcaaaaggagat
cagaagggaaggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaatttccaacctgtaattattttcagttttagtaaaaaagattgtgaa
gcttacgctcttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgattgtttatctgatgaagataaaaagctccctcag
gttgagcatgtacttcctcttttgaaacggggaattggtattcaccatggtggtttgctt
ccgattttgaaagaaaccatagaaatactcttttctgaaggcctgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagccagaactgtgttgtttacaaat
gctcgtaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattctcatggtagat
gaaaagatgagcccaacaattggaaaacagctacttaagggttcagctgatccactaaat
agtgctttccatttgacctacaatatggttttgaatttattgcgtgtagaagaaattaat
cctgagtatatgctagaaaaatctttctaccagtttcagcattatagagccattccaggt
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaattcccaatgaa
gaaagtgtagtcatctattacaagattagacagcagcttgccaaactaggtaaagagatt
gaagaatatattcataaacctaaatattgcttaccatttctacagcctggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtaaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaggagagtttgaagaattcagctactgaggctgcaaaaccagctaaaccc
gatgagaagggagagatgcaggttgttccagttttggtgcatctcctttctgctatcagc
agcattaggctttacattcctaaagaccttcggccagtggacaatagacagagtgtctta
aaatcaatacaggaggttcagaaacgttttcctgatggtgtgccattgttagatcccatt
gatgacatgggcattcaagatcaagggctaaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatcccaatttggaaactgtatataca
ctttgtgaaaaaaaagctcagattgcagtagatattaaatctgcaaagcgggaactgaaa
aaagcaagaacggtcctacaaatggatgagcttaaatgtcgaaaacgtgttttaagaagg
ttgggctttgctacttcctctgatgtcatagagatgaaaggacgggtggcctgtgagatc
agcagtgctgatgaactccttctcactgagatgatgtttaatggcctttttaatgacctt
tctgcagaacaagcaactgcattattaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagaacagttagctggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagcaaaattggaaattgatgaggaaagttatctaaac
tcattcaaacctcacttgatggatgtggtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaattgcttcgacaaatgtgtcaggcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagcgagatatcgtgtttgctgccagcctc
tacttataa

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