Entry |
|
Symbol |
Mtrex
|
Name |
(RefSeq) exosome RNA helicase MTR4
|
KO |
|
Organism |
dsp Dipodomys spectabilis (banner-tailed kangaroo rat)
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:dsp00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122117125 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:dsp03019]
122117125 (Mtrex)
03041 Spliceosome [BR:dsp03041]
122117125 (Mtrex)
03009 Ribosome biogenesis [BR:dsp03009]
122117125 (Mtrex)
03016 Transfer RNA biogenesis [BR:dsp03016]
122117125 (Mtrex)
Enzymes [BR:dsp01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122117125 (Mtrex)
Messenger RNA biogenesis [BR:dsp03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122117125 (Mtrex)
Spliceosome [BR:dsp03041]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122117125 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
122117125 (Mtrex)
Ribosome biogenesis [BR:dsp03009]
Eukaryotic type
Pre-60S particles
Helicases
122117125 (Mtrex)
Transfer RNA biogenesis [BR:dsp03016]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122117125 (Mtrex)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
Unknown
|
AA seq |
1042 aa
MADAFGDELFSVFEDDSTPAAGTKKDKEKEKGKWKGLPVSSDKAGKRFDVKLQPESTNSG
KNKRDADFEGTEELIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSIRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAVDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEESYLN
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL |
NT seq |
3129 nt +upstreamnt +downstreamnt
atggcggacgctttcggggacgagctgttcagcgtgttcgaggacgactcgactccggct
gcaggaaccaagaaagacaaagaaaaagagaaggggaaatggaaaggactgccagtgtct
tcagacaaggccgggaaacgttttgatgtcaagttacaaccagagtcaactaatagtgga
aaaaacaagagagatgcagattttgaaggcacagaagaacttatttttggaaagaagccc
aggatagaagagtcaataactgaagacttaagtttggcagacctgatgccccgagtcaag
gtacagtcagttgaaactgttgaaggatgtacacacgaggttgctcttcctgcagatgag
gattatttaccactgaaaccacgagttggaaaagcagcaaaggaatatccatttattctt
gatgctttccaaagagaagccattcagtgtgttgataataaccagtctgttttggtatct
gcgcatacatcagcaggaaaaactgtatgtgccgaatatgctattgcactagccttgcgg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaatcagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgactacagagattttgagaagtatgctgtatagaggttct
gaagttatgcgagaagttgcctgggtcatatttgatgaaattcattatatgagagattca
gaacgtggtgttgtatgggaagaaacaattattttgcttcctgataatgttcattatgtc
tttctttctgctactattccaaatgctcgacagtttgctgaatggatttgccatttacat
aaacagccctgtcatgtaatttacacagattatcggcctactccattgcagcactacatt
tttccagcagggggagatggtcttcaccttgttgttgatgaaaatggtgactttagagaa
gataattttaatactgcaatgcaagtgcttcgagatgctggtgatctggcaaaaggagat
cagaagggaaggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaatttccaacctgtaattattttcagttttagtaaaaaagattgtgaa
gcttacgctcttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgattgtttatctgatgaagataaaaagctccctcag
gttgagcatgtacttcctcttttgaaacggggaattggtattcaccatggtggtttgctt
ccgattttgaaagaaaccatagaaatactcttttctgaaggcctgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagccagaactgtgttgtttacaaat
gctcgtaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattctcatggtagat
gaaaagatgagcccaacaattggaaaacagctacttaagggttcagctgatccactaaat
agtgctttccatttgacctacaatatggttttgaatttattgcgtgtagaagaaattaat
cctgagtatatgctagaaaaatctttctaccagtttcagcattatagagccattccaggt
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaattcccaatgaa
gaaagtgtagtcatctattacaagattagacagcagcttgccaaactaggtaaagagatt
gaagaatatattcataaacctaaatattgcttaccatttctacagcctggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtaaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaggagagtttgaagaattcagctactgaggctgcaaaaccagctaaaccc
gatgagaagggagagatgcaggttgttccagttttggtgcatctcctttctgctatcagc
agcattaggctttacattcctaaagaccttcggccagtggacaatagacagagtgtctta
aaatcaatacaggaggttcagaaacgttttcctgatggtgtgccattgttagatcccatt
gatgacatgggcattcaagatcaagggctaaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatcccaatttggaaactgtatataca
ctttgtgaaaaaaaagctcagattgcagtagatattaaatctgcaaagcgggaactgaaa
aaagcaagaacggtcctacaaatggatgagcttaaatgtcgaaaacgtgttttaagaagg
ttgggctttgctacttcctctgatgtcatagagatgaaaggacgggtggcctgtgagatc
agcagtgctgatgaactccttctcactgagatgatgtttaatggcctttttaatgacctt
tctgcagaacaagcaactgcattattaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagaacagttagctggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagcaaaattggaaattgatgaggaaagttatctaaac
tcattcaaacctcacttgatggatgtggtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaattgcttcgacaaatgtgtcaggcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagcgagatatcgtgtttgctgccagcctc
tacttataa |