KEGG   Dipodomys spectabilis (banner-tailed kangaroo rat): 122117197
Entry
122117197         CDS       T07891                                 
Symbol
Ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03420  Nucleotide excision repair
dsp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:dsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122117197 (Ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    122117197 (Ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dsp04121]
    122117197 (Ercc8)
   03400 DNA repair and recombination proteins [BR:dsp03400]
    122117197 (Ercc8)
Ubiquitin system [BR:dsp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     122117197 (Ercc8)
DNA repair and recombination proteins [BR:dsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      122117197 (Ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD_LRWD1 Beta-prop_EML Beta-prop_TEP1_C ANAPC4_WD40 WD40_RFWD3 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_RIG_1st Beta-prop_Nup120_160 Beta-prop_WDR11_1st Beta-prop_HPS5
Other DBs
NCBI-GeneID: 122117197
NCBI-ProteinID: XP_042546820
LinkDB
Position
Unknown
AA seq 396 aa
MMGFLVSRQAGLEDPLRFRRAESTRRVLGLELNKDRDVERIHSSGINTLDIEPIEGRYML
SGGSDGVIVLYDLENSSRQPYYTCKAVCSVGRNHPDVHKYSVETVQWYPHDTGMFTSSSF
DKTLKVWDTNTLQTADVFTFEETVYSHHMSPIATKHCLVAVGTRGPKVQLCDLKSGSCSH
ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQYNGKKSQAVESA
NTAHNGKVNGLCFTSDGLHLLTVGTDDRMRLWNSSSGENTLVNYGKVCNDSRKGLKFTVS
CGCSSEFVFVPYGSTIAVYAVYSGEQITMLKGHYKSVDCCVFQSNFQELYSGSRDCNILA
WVPSLYEPIPDDDETTTKSQVNQAFEDAWSSSDEEG
NT seq 1191 nt   +upstreamnt  +downstreamnt
atgatgggctttttggtctctcggcaagcaggtttagaggacccgcttcgcttccggaga
gccgagtccacacgcagggtactgggactggagttaaacaaagacagagatgttgaaaga
attcatagcagtggcattaacacccttgacattgaacctattgaagggagatacatgtta
tcaggtggttcagatggtgtgattgtactatatgaccttgagaactccagcagacaacct
tattacacatgtaaagcagtctgttccgttggcagaaaccatcctgatgtccacaaatac
agtgtggagactgttcagtggtatcctcatgacacgggcatgttcacttcaagctcattt
gataaaactctgaaagtatgggatacaaatacactacaaactgcagatgtgtttacattt
gaagaaactgtttatagtcatcatatgtctccaattgccaccaagcactgtttagtagca
gttggtactagaggaccgaaagtacaactttgtgacttaaaatctggatcctgttctcac
attctacagggtcacagacaagaaatattagcggtttcctggtcaccacgttatgactat
atcttggcaactgcaagtgctgacagtagagtaaaattatgggatgtgaggagagcatca
ggatgcttgattactcttgatcagtataatggtaaaaaatcacaagctgtcgaatcagca
aatactgctcataatgggaaagttaatggcttatgttttacaagtgatggacttcacctt
ctcactgttggtacagatgatcgaatgaggctctggaacagttccagtggagaaaacaca
ctagtgaactatggaaaagtttgtaatgacagtagaaaaggattgaaattcactgtctcc
tgtggctgcagttcagaatttgtttttgtaccatatggtagcaccattgctgtttatgca
gtttactcaggagaacagataactatgcttaagggacattataaaagtgttgactgctgt
gtatttcagtctaatttccaggaactttacagtggtagcagagactgcaacattcttgct
tgggtaccatccttatatgaacccattcctgatgatgatgagactaccaccaaatcacaa
gtaaatcaagcatttgaagatgcctggagcagcagcgatgaggaaggatga

DBGET integrated database retrieval system