Dipodomys spectabilis (banner-tailed kangaroo rat): 122118145
Help
Entry
122118145 CDS
T07891
Symbol
Pcdh1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122118145 (Pcdh1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dsp01009
]
122118145 (Pcdh1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
dsp04515
]
122118145 (Pcdh1)
Protein phosphatases and associated proteins [BR:
dsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122118145 (Pcdh1)
Cell adhesion molecules [BR:
dsp04515
]
Cadherins
Protocadherins
122118145 (Pcdh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
122118145
NCBI-ProteinID:
XP_042547995
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MDSRAGGRCCPEAVLLILEPARMGPLRPNSGPGGQQLLLPLLLLALLLLSAPSAGHATRV
VYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPEN
TNIGSLFPIPLASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDR
ERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGANPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVRDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVVAEVTASDADSGSNAE
LVYSLEPEPAAQGLFTISPENGEIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLSVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN
TSHRLLTPQTRLGETVSQVTAEDMDSGVNAELTYSIAGGNPYGLFQIGPHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSMDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSGKASKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSS
PSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacagcagggccggcggccggtgctgccccgaggcggttctcctgattctggagcct
gccaggatggggcccctgaggcccaactcgggccctggggggcaacagttgttgctgccc
ctcttgctgctggcattgctactcctgtcagctccatctgcaggccatgccactcgggtg
gtgtacaaggtgccagaggaacagccacctaacactctcattggaagcctcgcagctgac
tatggctttccagatgtgggccatctgtacaaactagaggtaggtgctccataccttcga
gttgatggcaagacgggtgacatcttcaccacagagacctccattgaccgtgaggggctt
cgtgaatgccagaaccagctccctggtgaaccctgcatcctggaatttgaggtgtctatc
acagaccttgtgcagaatggcagcccccggctgctggagggccagatagaggtgcaagac
atcaacgataacactccgaacttcgcctcacctgtcatcactctggccatccctgagaac
accaacattggctccctcttccccatcccactggcttcagatcgtgatgctggccccaat
ggtgtggcttcctatgagttacaggctgggcctgaggcccaggagctatttgggctgcag
gtggctgaggaccaggaggagaagcagccacagctcattgtgatggggaacctggatcgt
gagcgttgggactcctacgatctcaccatcaaggtgcaggatggaggcagccccccacgt
gccagcagtgccctgctgcgtgtcactgtgcttgataccaacgacaacgctcccaagttc
gagcggccctcctatgaggctgagctgtctgagaatagccccatcggccactcggtcatc
caggtgaaggccaatgactcagaccaaggtgccaatgcagaaattgactacacgttccac
caggcgcctgaagttgtgaggcgtctcctgagactagacagaaacactggactcatcact
gttcagggtcctgtggaccgtgaagaccttagtaccctgcgcttctcagtgcttgccaag
gaccgaggcgccaaccccaagagtgctcgggcccaggtggtagtgactgtgaaagacatg
aatgacaatgcccccaccattgagatccgaggcatagggctggtgacccatcaagatggt
atggctaacatctcagaggacgtggcagaggagacagctgtggctctggtgcaggtatct
gatcgagatgagggagagaacgcagctgtcacctgtgtggtagcaggtgatgtgcctttc
cagctccggcaggccagtgagacgggcagtgacagcaagaagaagtacttcctgcagact
actaccccactggactatgagaaggtcagagactacaccattgagattgtggctgtggac
tctggtaaccccccactctccagcaccaattcccttaaggtgcaggtagtcgatgtcaat
gacaatgctcctgtcttcacccagagtgtgactgaagttgctttcccagaaaacaacaag
cctggtgaagtggtggccgaggtcactgccagtgatgctgactcgggttctaatgcagag
ctggtttactctctggagcctgagccggctgcccagggtctgtttaccatttcacctgag
aatggagagatcagggtgaagacatcccttgatcgagaacagagagacagctatgagcta
aaggtggtagcagctgaccggggcagccccagtctccagggcacagccactgtccttgtc
aatgtgctggactgcaatgacaatgaccccaaatttatgctgagtggctacaatttctca
gtgatggagaacatgccggcactgagtccagtgggcatggtgactgtcattgacggggac
aagggggaaaatgctcgtgtacagctctcagtggaacaggacaatggtgactttgtgatc
cagaatggcacaggcactatcttgtccagcctgagctttgatcgagagcaacagagcacc
tacaccttccagctgaaggcagtggatggtggtgttccacctcgctcagcttacgttgga
gtcaccatcaatgtgctcgatgagaatgacaacgccccctttatcacggccccctccaac
acttctcaccggctgctgaccccacagacccgtcttggtgagacagtcagccaagtgaca
gctgaggacatggactctggtgtcaatgctgagctaacgtacagcatcgctggcggcaac
ccttatggactcttccagattgggccacactcaggtgccatcaccctagagaaagagatt
gagcggcgccaccatgggctacaccgtcttgtggtgaaggtcagtgaccgaggcaagccc
ccacgctatggcacagctctggttcacctttatgtcaatgagaccctagccaaccgcaca
ctattggagaccctacttggccatagcatggacacgccactggatattgacattgctgga
gatccagagtatgagcgctccaagcagcgtggcaacatcctctttggtgtcgtggcaggt
gttgtggctgtggctttgctcatcgccttggcagtgcttgtgcgctactgccggcagcgg
gaggccaagagtggctaccaggctggtaagaaggaaaccaaggacctgtatgcccccaag
cccagtggcaaagcctcaaaaggaaacaaaagcaaaggcaagaagagcaagtccccaaag
cctgtgaaaccagtggaggatgaagatgaagctgggctgcagaagtctctcaagttcaac
ctgatgagcgatgccccaggggacagtcctcgcatccacctacccctcaactacccacca
ggcagccctgacctgggccgccactatcgttctaactccccactgccttccatccagctg
cagccccagtcaccctcggcctccaagaagcaccaggtggtgcaggacctgccgcctgca
aacacatttgtgggcactggggacaccacatccacaggctctgagcagtactccgactac
agctaccgtaccaacccccccaaataccccagcaagcagttacctcaccgccgtgtcacc
ttctcagccaccagccaggcccaggagctgcaagacccatcccagcacagttactatgac
agtggtctggaggagtctgagacaccatccagcaagtcatcctcagggccccgacttggt
cccctggccctacctgaggatcactatgaacgcactacccccgatggcagcataggcgag
atggagcacccggagaacgacctgcgccctttgcctgatgttgccatgacgggcacgtgt
acccgggagtgcagtgagtttggccactctgacacatgctggatgcctggccagtcatct
cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgcgggcgccggcagcccgagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgac
tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca
cccgcagccacaccggcatctgcccagacggccaagcgcgagatctacctgtga
DBGET
integrated database retrieval system
