Dipodomys spectabilis (banner-tailed kangaroo rat): 122118933
Help
Entry
122118933 CDS
T07891
Symbol
Focad
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122118933 (Focad)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122118933 (Focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
122118933
NCBI-ProteinID:
XP_042548819
LinkDB
All DBs
Position
Unknown
AA seq
1801 aa
AA seq
DB search
MSDDIKKRFDFPNSLIQSQAVGHLIAAVLKENGFSGKIHQSTNQTPALNLLWEKCCSDNV
VVRTACCEGLVALVAQDHAEFSYVLNGILNLIPSTRNTHGLINALMKLLRMQALQADPNG
EKNIQGIYTIRNHPQPLITVLEHRPDCWPVLLQQLTAFFRQCSERSEASCIQIMAPFLWY
LYCEPFQLQEYANLRPALLKELLQPRVPCDKAQPSVLKQEILRMFCDMIPCLQMKDLTQT
TEVMLFIEEVYLSLLRHPVFWKIQLIQLTLQLLCVCEVSLKITGECSSLIQLLEHSIGVL
KEDFPVELVIIGIAILLLQTPSSQQKPILNLALKLLFCAEGQKIPKSSLLLVMPLLQILS
STPLEDCMAMEEEGPSRQQLALNLLEKVQQECYRDDQQQLSCRLAFPITSIHNSVLTAWR
ILEVMREESAARDWLASVESLLPITSTIPVHVFLLLTYLLVEDKGQNLHQILKLTTQLAQ
TDSSQVPNLIPVLMFKLGRPLEPVLYSDILYTLPTLGVHKVCTGQILRVIQLLGTTPQLR
AVTLRLLTSLWEKQDRVYPELQRFMAMSDMPSLSVSKELQWEKLIAKAASIRDICKQRPY
QHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTR
PLILKTLSELFSLVPSLTVNTSEYENFKVQALSFLWTHTQSKDPVIANAAYKSLSHFSAG
EHTILHLPEKIRPEIPAPEELDEDEDEEDVDLSVPGPCYLKLLSLTAPLVLPALEEFFTS
LVKQEMVNMPRGIYHSALKGGIRPDQGKTVAGIPNFILKMYETNKQPGLKPGLAGGILFC
YDVAMYQSKDGKPLNRLMASRGRSFKQMALALVHEVHIQLSEWHRALFLPQAWLAYMNRA
YHAILQGRIGELELQLKHGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPVVKGNA
LLALSSLAVVASKHETSLSSDSDGFLEVQPNFLPMREWISMVLDTLLVIVDSHYQPKGQL
FSCFYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSAD
ESQAVQIHMGLALGMFLSRLCEEKLSDISGQQMNLLLMKSLDALENCCFDTTLEYNTGCI
LGVGLVLSLMSHSSQMESRVHVAASLRKLSAYLDDSRSQSRMFQEVLAYTLSCVCTSAFS
AGIIEAAEAEDIMNKLQLLVEHNQQTSGFALALGNIVHGLSVSGHGKAEVLGSKLLPGWI
RIVLAEGTPTMLCLAALHGLVALVGSEGDAIQLKSEAIQSSHFQGRLNEVIRTLTQVISV
SGVIGLQSNAIWLLGHLHLSTVSSNQSRTSVPTDYSYLPESSFIRAAIGFFITAGKKGPE
AVPPSLLKVVMKPIATVGENYQFPPANWAALLSPLMRLNFGEEIQQLCLEIMVTQAQSSQ
NAAALLGLWMIPPLIHSLSLNIKKYLLVSVPLWIKHISDEQIQGFVENLMVAAFNSASPL
CNPELCPSALQGLSQAMKLPSPTHHLWNLLSEASGKIFDLLPNKILRNDLELYISVAKCL
SEMTDDAANQVVHITKNNVEKAAFIKLYLVSQGRFPLMSITDMLSVTVQQHNREILAWMI
LHSLYHARIVSHANTGVLKRMEWLLELMGYIRNIAYQSTSIHNVALDEALDFLLLIFAAA
VVAWADHDAPLLLGLTASWLPWHQENGPAGPASSFLGRSPMHRVTLQEALTLLPNSMLLL
LQKEPWKEQTQKFIDWLFSIIESPKEALSAKSKDLLKATLLSLRVLPEFKKKAVWSRAYG
W
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatatcaagaaaaggtttgactttccaaattctcttattcagtcacaggct
gttggtcatcttattgctgcagtcttaaaagaaaatggcttttcaggaaagatccaccaa
tctacaaaccagactccagctttgaacttactgtgggagaagtgttgcagtgacaatgta
gtagttcgaacagcctgttgtgagggtctggtggcacttgttgctcaagatcatgcagag
ttcagctatgtgctcaatgggatactcaatctgattccttcaaccaggaatacacatggc
ttgataaatgctcttatgaaattattacgaatgcaagctctacaggcagatccaaatggg
gagaagaatattcagggcatatatactattagaaatcatcctcagcctttgatcactgtc
ctggaacacagacctgattgttggccagtacttttgcagcagctgacagcctttttccgg
cagtgctctgaaaggtcagaagcttcatgtatccaaataatggcaccgtttctttggtac
ctatactgtgaaccatttcaattacaagaatatgctaatcttcgacctgctttgctaaaa
gagttacttcagcccagggttccttgtgataaagcacagccatcagtattgaaacaagag
atacttcgaatgttttgtgacatgattccttgtttacagatgaaagatctgacacagacc
acagaagtgatgctgtttatcgaggaagtgtatttaagccttttgcgtcatcctgttttc
tggaaaattcagcttatccagctgactcttcagctgttatgtgtctgtgaagtcagctta
aagataactggagaatgctcatctttaattcagcttttagagcacagcattggagttctg
aaggaggattttcctgtggaattggtcataatcggaatagctatacttcttctacagact
ccatctagtcagcagaagccaatcttaaatctggctttgaagctcctcttttgtgctgag
ggtcagaaaatcccaaaatcatccttgctactcgtgatgccccttctgcagatattatct
tctactcccttggaagactgtatggcgatggaggaagaaggtccttctaggcagcagtta
gctctaaatcttttggaaaaggtacaacaggagtgttacagagatgaccaacagcagctt
tcctgcaggcttgccttccctattaccagtatacataactctgtactcactgcctggagg
attcttgaagtaatgagagaagaatctgcagcaagggactggctggcttccgtggagtcc
ctgctgcccatcacttcaaccatccctgtgcatgttttccttctgctgacttacctcctg
gttgaagataaaggacagaatcttcaccaaatactaaaactcaccacacaattagcccaa
acagattcttctcaggtgccaaatctgattccagttttaatgttcaaattaggaagacct
ttggaacctgtgctatacagtgacatattgtatacattacctacacttggtgttcacaag
gtatgcacagggcagattctacgagtaatccagttgcttggaactacccctcaactgaga
gctgtcactttgcgcctgctgacatctttgtgggaaaagcaggatcgtgtatatcctgaa
ctgcagcgttttatggctatgtctgacatgccttccctctctgtgagcaaggagctccag
tgggagaaactgattgccaaagcagcatccatcagagatatatgcaagcaaaggccttat
cagcatggtgcagacatgttggctgctatttctcaggtgctcaatgaatgtaccaagcct
gaccaagctactccagcagccttggtgttgcaaggtcttcatgcactctgccaagcagag
gttgtttgtatccgctctacttggaatgctctctctccaaagttaagttgtgacaccaga
cctctcattttgaagaccctgagtgaattgttctctctcgttccttccttaacagtcaat
acatctgagtatgagaatttcaaagttcaagccctcagcttcctctggacccacactcag
agcaaggacccagttatagctaatgctgcctacaagtctctgtcccactttagtgcagga
gagcacaccattcttcaccttcctgaaaagatccgaccagaaatccctgctcccgaagag
ttagatgaggatgaagatgaggaagatgtagatctttcagttcctggcccttgctatctg
aaactcttatcactcactgctcctttggttttgccagctttagaagaattttttacatca
cttgtgaagcaagaaatggtaaatatgccccgtgggatatatcactctgcattaaaagga
ggtatccgcccagaccaaggaaagactgtggcaggaatccccaattttatattgaagatg
tatgaaacaaataagcaaccaggattaaaacctggccttgcaggtggcattttattttgc
tatgatgttgccatgtaccagagtaaagatggcaaaccattaaatcgactaatggccagt
agagggcgaagcttcaagcagatggcacttgcccttgtacatgaggtccacatccagctt
tcagagtggcaccgtgcactttttcttccacaggcctggcttgcatatatgaaccgagct
taccatgctattttacaaggaagaataggagagctggagctgcagttaaaacatgggaaa
gaaggacctgaggaggtgcagtacaaaagaagcactgcctggctatgggtcagagacatg
ttgactgatgagattaccaagactgctgcaaaagagagtcctgtagtcaaaggcaatgcc
ctgctggctttaagcagccttgctgttgttgcatccaaacatgaaaccagcctctcctca
gattctgatggattcctggaggttcaacctaattttcttccaatgagggaatggatttcc
atggtccttgatactctactggtcattgtggatagccattaccaacccaaaggacaactt
ttctcctgcttttatcataaatcatattctggtgaaaacacagctagtgccattgcccgt
tctgctgctgccacggctttgtctctccttgtgccagttttcattatctcttgcaaagag
aaggttgaggaaatcctgaacatgctgactgccaggttacctgggaaaccgagtgctgat
gaatctcaagccgtgcaaatccacatgggccttgctttggggatgtttctctctcgcttg
tgtgaagagaaactcagtgatatatctggccaacagatgaaccttctcctgatgaagtcc
ttggatgccctggaaaactgctgctttgataccactcttgaatacaacaccggctgtata
ttgggagttggacttgtgctgtccctcatgagccacagcagccaaatggagtcgcgtgtt
catgtggcagcatcacttcggaagttgtctgcttacctcgatgacagcaggagccagagt
aggatgtttcaggaggtccttgcctacacccttagttgtgtgtgtacatcagcattcagt
gctggcattattgaagctgcggaggctgaagatattatgaacaaacttcaactgttagta
gagcacaaccagcagacttcaggttttgcactggcactaggaaacattgttcatggttta
tctgtaagtggacatggaaaagctgaagtcttgggcagtaaacttcttcctggctggatc
agaattgttctagcagagggcactcccacaatgctgtgtctggcagctcttcatggccta
gtggccttagtgggttctgaaggggatgcgatacagttgaagtcagaagccatccagtct
tctcatttccaaggcagacttaatgaagtcatcagaactttaactcaggtcatcagtgtc
tctggggtgattggtcttcagtcaaatgcaatctggcttctaggacatctccatctatct
accgtgtcctctaatcaaagcagaacttctgttccgactgactatagctatttgcctgaa
agcagttttattagagcagcgattggcttcttcattacagcagggaaaaaaggtcctgag
gctgtacctccttcccttctcaaagtagtgatgaaacccatagcaactgttggagaaaac
taccagtttcctcctgcaaactgggctgcacttctctctccacttatgaggctaaacttt
ggagaagagatacagcaactgtgccttgaaattatggtgactcaagcacaatcatcacag
aacgcagctgcactgctaggcctgtggatgataccaccacttatccacagtctgagtctg
aatatcaagaaatacctcctagtatctgtacctctgtggataaaacacatctctgatgaa
cagatccagggctttgtggaaaacttaatggtagcagcctttaattcagcttccccgctt
tgcaatcctgagttatgcccaagtgccttacagggtctgagccaggccatgaaactgccc
agcccaacccaccacctctggaatctgctctctgaagcttctggaaaaatttttgacctt
ctgccaaataagattctgagaaatgatcttgagctctatatcagtgtagcaaagtgcctc
tcagaaatgacggatgatgctgccaatcaagttgtccatatcactaagaataatgtggaa
aaggctgccttcatcaagctgtacttggtttctcaaggacgattccccttgatgagtata
actgatatgctcagtgtcactgtgcagcagcacaacagagaaatacttgcctggatgatt
ctgcatagcttgtaccatgcacggattgtgagccatgccaacacaggagtgttgaagaga
atggagtggctcttggaactgatgggttatatccgaaatattgcttaccagtcaacatct
attcacaatgtggctcttgatgaggctttggacttcttgttgttaatatttgctgcagca
gtggtggcttgggcagaccatgatgctccactcctccttggtcttactgccagttggttg
ccatggcatcaggagaatggcccagctgggccagcatcaagcttccttggcaggagtcca
atgcacagggtcactctgcaggaggctctcactctccttcccaatagcatgctgctgctg
ctgcagaaagagccatggaaggaacagacccagaagttcattgactggctattcagcatc
atagaaagtcctaaagaagccctctcagcaaagtccaaggatcttttgaaagccaccctg
ctatccttaagagttctcccagagtttaagaagaaagccgtgtggtccagagcatatgga
tggtaa
DBGET
integrated database retrieval system
