Dipodomys spectabilis (banner-tailed kangaroo rat): 122118988
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Entry
122118988 CDS
T07891
Symbol
Frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122118988 (Frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
dsp04091
]
122118988 (Frem1)
Lectins [BR:
dsp04091
]
C-Type lectins
Lecticans
122118988 (Frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
122118988
NCBI-ProteinID:
XP_042548895
LinkDB
All DBs
Position
Unknown
AA seq
2179 aa
AA seq
DB search
MNAPRRAGPEALLLLLLLDWTSSTFITVNRGMRVMKGSSAFLSAEDLKFAIPREKDACKV
EVVRNEPITQRVGKLTPQVFDCHFLPNEVRYVHNGCPILDEDTVKLRLYRFTETDTFTET
FELQVHLLEPDCNIIHMSDKVLEVSEFYGLSRTIDKNLLSFDYDRTANLECTIRLDPLTT
LLPAHGQMVVVEPLPEGPRGDQPHSFFPESQLGTELKCPGGSCALGLKKIGSLKVSCEEF
LLMGLRYQHMQPPSPNIDYIPIQLDLMDSRSKIVYKSERAWLPVFIRAGIPNQIPRAAFM
AMFILEVDQFILTSLTTLVLDCEEDETPKPLLVFNITKAPLQGYVTHLSDHTRPISSFTW
RDLSDLQIAYQPPNSSHSERRHYEIELEVLDFFFGKSAPIVVHISIRTADTNASRVSWNT
GLDLLEGQSRAITWEQFQIVDNDDIGAVQLVTVDGLRHGRLTVRGEKGFLFTVADLQAGV
VRYHHDDSDSTKDFVVFRIFDGFHSTRHKFPINILPKDDSPPFLITNVVIELEEGQTVLI
QGSMLRASDMDSSDDYIFYNITKPPQAGEIMKKPGPGLIGYPVQGFLQRDLFNGIISYRH
FGGEIFEDSFEFVLWDSHEPPNLSGPQIVTIHITPVDDQLPKEAPGVSRHLVVKETEVAY
ITKKHLHFLDMESCDRELLYTVTTPPFFSFGPRHSDAGKLFMVDSIPKLTKNPVALGLRS
FTQHAVNHMKVAYMPPMQDIGPHLQHVQFTVSISNQHGGTLHGICFNITILPVDNQVPEV
FTNSLRVAEGGQCIVDTEHIHVSDVDTLPDNIYLSLTGTPLSGRVELNGFPLNPGDTFSW
RDLHTLKVRYQHDGSEVLQDDICLEVTDGKNSAEFVLHVEVFPVNDEPPVLKADLIAVMP
CLEGGEVVITPEYLCATDMDSDDLTLVFMIVGEPQHGMVKKAGVRVDSFSQADVISGAVT
YRHTGGEIGLVPCFDTITLVVLDGEASPVINGCCYHRPDPSALQEAFPVYDLNITVHPVD
NQPPSIEIGTMFVVDEGFSAAITINHLSVTDPDTAADDLEFVLVSPPQFGYLENTLPSAG
FEKSNMGISISSFQWRDMKSLHINYVQSKHLRIEPTADQFVVSVTDGSQRSSETSFYIRI
NPTNDEAPDFVVQNLTVCQGGMVELDSSIISAADLDIPKDHLLFSISQKPHHGLLIHGGP
SENTPPNNQPANPHQKHELIHNFSMDLLKTGLKLSYVHDGSEGLADDFAVQLSDGKHKIV
KMISIEVFPVNDEKPTLSKKAEVVVNVGDTRILSSAVLSAIDKDSPREKIYYLFEKLPQN
GQLQLKIGRGWVPLSPGMKCTQMDVDLNLLRYTHTGAIDSHNRDSFTFYLWDGDNRSPAY
DCHIIIKDMGKGDIVILTKPLVVSKGDRRILTTSTLLAVDATDRPEELVYVITSPPQHGQ
VEYVRYPGVPITSFSQMDVAGQTVCYVHMSKAAVCHDSFRFIISNGLQTKHGVFEIILET
VDKALPVVTRNKGLRLAEGAMSLLSPDQLQVTDPDTSAENLTFILDQLPQHGKLYLRGSV
LIQLNFTQQDVDSRKVAYQHSGGHSHTDCFTFVVTDRTNRGFVVDGRVQEEPVSFTIQVD
QLDKTAPRITHLHFPSQVSLLKNGCYGIYITSHVLKASDPDTEDDEIIFKILRGPLYGHL
ENTTTGEFIHEKFSQKDLNSKTILYMINPSLEVNSDFMELQVTDPTGNSATPQILELKWS
HIEWSQSEYEVCENVGMLTLEVTRRGYSMDSAFVSIKVNQVSATVGKDFTVTPSKLIQFD
PGMSTKMWNIAITYDGLEEDDEVFEVILNSPVNAVLGTKTKAAVKILDSKGGQCLTSYSS
NHSQHKAWEKGVWPLLPSGSSSSISGGFPHLERRYPSSSQQLVVTKGSTLRSFDAAVLSQ
RKLRTHGNGKAVLPSSVYKNGTDIIYNYHGVVSLRLEDDSFPTHKRKATVSILSQPHRTV
KAAELPLAETESTSASHFPRQNQLPSFPKNCTVEIKGLLHFEESNQKLYQCNGIAWKIWS
PQTKEVEDKSCPAGWHLHSGYCHTLITEQKSTWALAMQACREQHLGNLVTVFSRQHMQWL
WHISGKKPFWIGLNDQEHAGRWVWIGGEPVAFTNWRRGRPQNSRPGKNCVLVQKQGKWQT
KNCGKGKPHNFICSWKLEM
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctccacgccgggccgggcccgaggccttgctgctgctcttgctcctggactgg
accagctccactttcatcactgtgaaccgagggatgagggtgatgaagggcagttccgcc
ttcctgtcggcagaggacctgaagtttgccatccccagggagaaggacgcctgcaaagtg
gaggtggtgaggaatgagccgataacccagagggttggaaagctcaccccacaggtcttt
gactgccatttccttcccaatgaagtaaggtacgttcacaatgggtgtccgatccttgat
gaagatactgtgaagcttaggctttacagatttactgaaacagacacattcacggaaacc
tttgagctgcaggtccatctcctggaaccagactgtaacatcatccacatgagtgacaaa
gtgctggaggtgtctgagttttatggcctgtccagaaccatcgataagaacctgctcagc
tttgattatgacaggacagccaacctggaatgtaccatcaggctagaccccctgacaacc
ctgctgccagcccatggacaaatggttgtggtggaacctcttccagaaggacctcgtgga
gatcagccacacagttttttccccgagtcccaactgggaacagaactgaagtgtccaggt
ggaagctgtgccctgggattgaagaaaataggaagtctcaaagtgagctgtgaggagttc
ctgctgatggggcttcgttatcaacatatgcagcccccctcccccaacattgattatatc
cccatccaactggatctcatggacagcaggagtaaaatcgtgtacaagtctgagagggcg
tggttgcctgtcttcatcagagctggtattccaaaccagattccaagggcggcgttcatg
gccatgtttattctggaagtggaccagttcatcctcacctctctgactacgttggtcctg
gactgtgaagaagatgagacccctaaacccttgctggtgttcaacatcactaaagctccg
ctccagggttatgtgactcacctgtcagatcacaccagacccatctcctcatttacctgg
agagatctcagtgacttgcagattgcctatcagccaccaaatagcagccattctgagagg
agacattatgagattgaactggaggtgttggacttcttctttgggaagagtgcccccatc
gtagtccacatttccatccgaacagcagacaccaatgcttcccgagtgtcctggaataca
ggtctggacctcctggaggggcagtctcgggccatcacctgggaacagtttcagattgtt
gacaatgatgacattggtgctgtccagttggtcactgtcgatggcctgcggcatggacgc
cttaccgtaagaggggagaaaggattcctcttcactgtggctgatcttcaagctggagtt
gttcgctatcatcacgatgacagcgactccaccaaagactttgtggtattcaggatattc
gatggctttcacagcacccgccacaaatttcccatcaatatcttacccaaagatgacagt
cctccattcctcataaccaatgttgtgattgaactggaggaggggcagaccgtcctgatc
caagggtccatgctgagagcttcagacatggactccagtgatgactacatcttctataat
atcacaaagcccccacaggctggagagatcatgaagaagccagggccaggactgataggc
taccctgtccaaggcttccttcagagggatctgtttaatggaatcatttcctatcgtcac
ttcggtggagaaatatttgaagattcttttgaatttgtcctgtgggacagccatgagcct
ccaaatctgtcagggccacagatcgtgacaatccatatcactccagtagatgaccagctt
ccaaaagaggctcctggagtctctcgacatttggttgttaaggaaacagaggtggcctac
ataaccaagaagcatctacatttcctagatatggaatcatgtgacagagagctgctctac
acagtaacaacacctccatttttctctttcggccccagacactcggatgctgggaagtta
ttcatggtggacagcataccgaagctaaccaaaaacccagtagccctgggattaaggtca
tttactcagcatgctgtgaaccatatgaaagtggcctacatgccccctatgcaagatatt
gggccccatctccagcacgtccagtttacagtttctatcagtaaccaacatggtggcact
ttgcatgggatatgctttaacattaccattcttccagtggacaatcaagttcctgaggtc
ttcaccaactctctgagagtggctgagggaggtcaatgcatcgtggacacagagcacatc
catgtttctgatgtggataccctaccggacaatatctacctctctctgacggggaccccg
ctgagtggaagggtggagctgaatggatttcccctaaatccaggggatacattttcttgg
agagaccttcataccttaaaagttaggtatcaacatgatggatctgaggttcttcaggat
gacatatgtttggaagtcacagatggcaaaaattcagcagaatttgttctacatgttgag
gtattccctgtaaatgatgagccaccagtcctaaaggctgacctcatagccgttatgccc
tgccttgaaggtggagaggtggtcatcacccctgaatatctttgtgctactgacatggac
agtgatgacttgacactggtgtttatgattgttggagaacctcagcatgggatggtgaag
aaggctggagtgagagtggacagtttttctcaggcggatgttatctcaggggcagtgaca
tacagacacacaggtggtgagattggcctggtaccttgttttgacaccattacattggtg
gttttggatggagaagccagccctgtcatcaatggctgttgctaccacaggcctgatcca
tcagctcttcaagaggcctttccagtgtatgatctcaatatcacagtgcatccagtagac
aatcaaccaccttccattgaaattggtaccatgttcgttgtagatgaaggcttctctgca
gccattaccattaaccacttgtctgtcactgaccctgacactgctgcagatgacttggaa
tttgttttggtttctcctcctcaatttggctaccttgaaaacacactcccttctgctggt
tttgagaaaagcaacatgggcatcagtatatcttcatttcagtggagagacatgaagtct
ttgcacattaactatgtgcaatccaagcatctgaggatagaaccaacggccgatcagttc
gtggtctctgttacagacgggtcacaacgctcctctgagacatcattttacattcgaatc
aaccccaccaatgatgaggcccctgactttgtagtgcagaaccttaccgtgtgccagggt
ggaatggtggagctggattcttccatcatcagtgctgctgacctggacattcctaaggac
cacttactcttcagcatctctcagaaaccacatcatggtctcctcatccatgggggaccc
agtgaaaacactcctccaaataaccagccagccaaccctcaccagaaacatgagctcatt
cataacttttccatggaccttcttaagactggactgaagctgtcatatgtgcatgatggc
tcagagggcctagctgatgactttgcagtccagttgtcagatgggaaacacaagatagtt
aaaatgatttcaatagaggtctttccagttaatgatgagaaaccaacattaagcaagaag
gctgaagttgtggtgaatgtgggtgatactcgtatcctgtcaagtgctgtcctttctgcc
atagataaagactcccccagggagaagatttactatttatttgaaaagcttccccaaaat
ggacaacttcaacttaagatagggaggggctgggtccctctctcccctggcatgaaatgc
acccagatggacgtggatctgaacttgctgagatacacacacacgggggcaattgattcc
cacaatcgagatagctttaccttctacctctgggatggtgacaacagatcacctgcatat
gattgtcacatcatcattaaggacatgggaaaaggtgacatcgtcattcttacaaaacca
ctggtggtgtctaaaggtgatcggcggatcctgacgacctccacgctcctggctgtggat
gcaacagacaggcctgaggaactggtgtatgtcatcacctcccctccacagcatggccag
gtggaatacgtccgctatcctggagttcccatcacaagcttcagtcaaatggatgttgca
ggacagacagtttgctatgttcacatgagcaaggcagcagtttgccatgacagcttcaga
ttcatcatcagtaatggactgcagacaaagcatggggtgtttgaaatcatactggagact
gtggacaaagccttgcctgtggtgaccaggaacaaagggctgaggttggctgaaggggcc
atgagtctgctctcccctgaccaactccaagtgactgacccagatacctctgcagaaaac
ctcaccttcatcctggatcagctcccacagcatggcaagctctacctaagggggtcagtg
ctgatccaactcaattttactcagcaggatgtggacagcaggaaggtggcctatcagcac
tcaggaggtcactctcacacagactgctttacttttgtggtcacagataggacaaaccgt
ggctttgttgtggatgggagagtgcaggaagagcctgtttcattcaccattcaggtagac
cagttggacaaaacagccccccggatcacacacttacatttcccttctcaagtgagcctc
ctaaaaaatggctgttatgggatttacatcacttcccatgtgctgaaggcatcagaccct
gacaccgaggatgatgagattatctttaagattttacgaggcccactatatggacatctg
gagaacacaacaacaggtgaatttatccatgagaaatttagccaaaaggatttgaacagt
aagactattctttatatgataaacccatctttggaagtaaattcagatttcatggaactt
caagtcaccgaccccacagggaactctgcaacccctcaaattttggagttgaagtggtct
catattgaatggtcacagtctgaatatgaagtctgtgaaaatgtgggtatgttgaccttg
gaagttaccagaaggggctattccatggattcggccttcgtgagcataaaggtcaaccaa
gtgtcagcgacagttggaaaagatttcacagtgactccatccaaactcattcagtttgat
ccaggaatgtcaactaagatgtggaatatagcaattacctatgacggattagaggaagat
gatgaggtctttgaagtaattctgaactcccctgtgaatgcagttcttggcacgaagaca
aaagctgcagtgaaaattttggactcaaaaggaggacagtgcctgacttcctattcctcc
aaccacagccagcacaaggcatgggaaaagggtgtttggcccttgttgccctctggctcc
tcctcatccatttctggtggtttccctcatctggaaagaagatacccttcatcttctcag
cagctagtggtcaccaaggggagcaccctgcggagctttgatgctgcagttctttctcaa
aggaagctcaggacccatgggaacggcaaggcagttttaccatcctctgtttataaaaat
ggaacagacatcatctataattaccatggggtggtttctttgagactggaagatgacagt
tttcccactcacaaaaggaaggctaccgtatccatcctgagtcagccacacaggacagtc
aaagcagcagagctgcctctggcagagacagaatccacaagtgcctcacactttcccaga
cagaaccagttgccatcattcccaaagaattgcacggtggagataaagggactcctccat
tttgaagaaagtaaccaaaaactgtatcaatgcaatggaattgcctggaaaatctggagt
ccccaaaccaaggaggtggaagacaaatcctgcccagctggatggcacctgcactcaggc
tactgccataccttgatcacagaacagaagagcacctgggccctggccatgcaagcttgc
agggaacaacacctgggcaaccttgtcactgtattctccaggcaacacatgcagtggttg
tggcacatcagtggaaaaaaacccttttggataggattgaatgaccaagagcatgctggc
cgctgggtgtggattggtggtgaacctgttgccttcaccaactggaggagaggacgccct
caaaactcaaggcctggaaagaattgtgttttggtacaaaaacaagggaaatggcaaacg
aagaactgtgggaagggcaagcctcataattttatttgttcctggaaacttgaaatgtaa
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