Dipodomys spectabilis (banner-tailed kangaroo rat): 122119567
Help
Entry
122119567 CDS
T07891
Symbol
Smarca4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03082
ATP-dependent chromatin remodeling
dsp04714
Thermogenesis
dsp05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122119567 (Smarca4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
122119567 (Smarca4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
122119567 (Smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsp03021
]
122119567 (Smarca4)
03036 Chromosome and associated proteins [BR:
dsp03036
]
122119567 (Smarca4)
Transcription machinery [BR:
dsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122119567 (Smarca4)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122119567 (Smarca4)
Chromatin remodeling factors
BAF complex
122119567 (Smarca4)
PBAF complex
122119567 (Smarca4)
GBAF(ncBAF) complex
122119567 (Smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Htt_C-HEAT
Motif
Other DBs
NCBI-GeneID:
122119567
NCBI-ProteinID:
XP_042549509
LinkDB
All DBs
Position
Unknown
AA seq
1650 aa
AA seq
DB search
MSAPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHGMVGPSPGPPSAGHPLPSQG
PGGYPQDAMHPMHKPMESMHEKGIADDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
HCGAGSGSASFAHSAPPPAGVPPDMEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
DSLTEKQWLKTLKAIEEGTLEEMEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDEES
KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSGSGRQLSEVFIQLPSRKELPEY
YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF
TSVRQKIEKEDDSEGDDSDEEEEAEEEGSESESRSVKVKIKLGRKEKPQDRGKAGRRRPS
RGARAKPVVSDDDSDEEQEEDRSGSGSEED
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctccagacccacccttgggcgggacgcccaggccgggcccttccccaggcccc
ggcccctcgcccggggccatgttgggccccagcccgggcccctcgccaggctccgcacac
ggcatggtggggcccagccctggcccaccctcagcaggacacccgctccccagccagggt
cccggcgggtaccctcaggacgccatgcacccgatgcacaagcccatggagtccatgcac
gagaagggcatagcggacgacccgcgctacaaccagatgaaaggaatgggcatgcgctcc
gggggccacgcagggatggggcccccgcccagccccatggaccagcactcccaaggttac
ccctccccgctggggggctctgagcacgcctccagtcctgttccagccagtggcccatcc
tcgggtccccagatgtcatctgggccaggaggggccccgctagatggggctgacccccag
gctttggggcagcagaaccggggcccaaccccatttaaccagaaccagctgcaccagctc
cgagctcagatcatggcctacaaaatgctggccaggggccagccccttcccgaccacctg
cagatggctgtgcagggcaagcggccgatgcccgggatgcagcagcagatgccaacacta
cctcctccttcagtgtccgccacgggccctggtcctggccccggccccggccccggccct
ggtcctggcccagcacctccaaattacagcagacctcacggtatgggagggcctaacatg
ccccctccaggaccctcaggtgtgccccctgggatgcctggccagccccccggaggaccg
cccaagccctggcctgaaggacccatggcaaatgctgctgcccccacaagcacccctcaa
aagctgatccccccgcagccgacgggccgcccttcgccggcaccccctgccgtgcctcct
gccgcctcccccgtgatgccaccacagacacagtcccccgggcagccagcccagcctgca
cccctggttccactgcatcagaagcagagccggatcacccctatccagaagccccggggc
ctcgaccccgtggagatcctgcaggagcgcgagtacaggcttcaggctcgcatcgcacac
cgaattcaggaacttgaaaacctccctgggtccctggccggggatctgcgaaccaaagcg
accattgagctcaaggccctcaggctgctcaacttccagaggcagctgcgccaggaggtg
gtggtgtgcatgcggagggacacggcgctggagacggctctcaacgccaaggcctacaag
cgcagcaagcgccagtccctgcgcgaggcccgcatcaccgagaagctggagaagcagcag
aagatcgagcaggagcgcaagcgccgccagaaacaccaggaatacctcaacagcattctc
cagcacgccaaggacttcaaggagtaccacagatccgtcacaggcaaaatccagaaactc
accaaggcggtggccacctaccatgccaacaccgagcgggagcagaagaaagaaaacgag
cggatcgagaaggagaggatgcggaggctcatggcggaggatgaggagggctaccgcaaa
ctcatcgaccagaagaaggacaagcgcctggcctacctcctgcagcagacggacgagtac
gtggccaacctcaccgagctggtgcggcagcacaaggccgcccaggtcgccaaggagaaa
aagaagaaaaagaaaaagaagaaggcagaaaatgctgaaggacagacaccggcaatcggc
ccggatggcgagcctctggatgaaaccagccagatgagtgaccttccggtgaaagtgatc
cacgtggagagcgggaagatcctcacgggcaccgatgcccccaaagctggccagctggag
gcttggctggagatgaacccagggtatgaagtggctccaaggtctgatagcgaagagagt
ggttcagaagaggaggaggaggaggaggaggaagagcagcctcagcccgcgcagcccccc
accctgcccgtggaggagaagaagaagatccccgacccggacagcgatgacgtctcagag
gtggacgctcggcacatcatcgagaacgccaagcaagacgtcgatgatgagtatggcgtg
tcccaggccctcgcccgcggcctgcagtcctactatgctgtggctcatgctgtcaccgag
agagtcgacaagcagtcggcgctgatggttaatggggtcctcaaacagtaccagatcaag
ggcttggagtggctggtgtccctgtacaacaacaacctgaacggcatcctggcggatgag
atgggcctgggcaagaccatccagacgatcgcgctcatcacatacctcatggagcacaag
cgcatcaacggccccttcctcatcatcgtgcccctctcgacactgtcaaactgggcgtat
gaatttgacaagtgggccccctccgtggtgaaggtatcctacaagggctccccggcagca
aggcgggctttcgtcccccagctccgcagcgggaagttcaacgtgctgctgaccacctac
gagtacatcatcaaagacaagcacatcctcgccaagatccgctggaagtacatgatcgtg
gacgagggccaccgcatgaagaaccaccactgcaagctcacgcaggtcctcaacacgcac
tacgtggccccgcgccgcctgctgctcacgggcaccccgctgcagaacaagctgcccgag
ctgtgggcgctgctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgag
cagtggttcaacgcgcccttcgccatgaccggggagaaggtggacctgaacgaggaggag
accatcctcatcatccgccgcctccacaaggtgctgcgccccttcctgctgcggcgcctc
aagaaggaagtcgaggctcagttgcccgaaaaggtggagtacgtcatcaagtgcgacatg
tctgccctgcagcgcgtgctgtaccgccacatgcaggccaagggcgtgctgctcaccgac
ggctcggagaaggacaagaagggcaaaggcggcacgaagacgctgatgaacaccatcatg
cagctgcgcaagatctgcaaccacccctacatgttccagcacatcgaggagtccttttct
gagcacttggggttcactggcggcatcgtccaaggcctggacctgtaccgagcctcgggc
aaattcgaactgctcgaccgaattcttcccaaactccgggccaccaaccacaaagtgctg
ctcttctgccaaatgacctcgctcatgaccatcatggaagactacttcgcttaccgcggc
ttcaaatacctcaggctggacggcaccacgaaagccgaggaccggggcatgctgctgaaa
accttcaacgagcccggctccgaatacttcatcttcctgctcagcacccgcgccggcggg
ctgggcctcaacctgcagtcggctgataccgtgatcatttttgacagtgactggaacccc
caccaggacctgcaagcgcaggaccgcgcccaccgcatcgggcagcagaacgaggtgcgc
gtgctgcgcctgtgcaccgtcaacagcgtggaggagaagatcctggcggccgccaagtac
aagctcaacgtggaccagaaggtgatccaggccggcatgttcgaccagaagtcgtcgagc
cacgagcggcgcgccttcctgcaggccatcctggagcacgaggagcaggacgagagcaga
cactgcggcgcgggcagcggcagtgccagcttcgcccactctgcccctccgccagcgggc
gtcccccccgacatggaggagccgccgctaaaggaggaagacgaggtgcccgacgacgag
acggtcaaccagatgatcgcccggcacgaagaggagttcgacctgttcatgcgcatggac
ctggaccggcggcgggaggaggcccgcaaccccaagcgcaagccgcggctgatggaggag
gacgagctcccgtcgtggatcatcaaggacgacgcggaggtggagcggctgacgtgcgag
gaggaggaggagaagatgttcggccgcggctcgcgccaccgcaaggaggtggactacagc
gactcgctcaccgagaagcagtggctcaagaccctgaaggccatcgaggagggcacgctg
gaggagatggaagaggaggtccggcagaagaagtcctcgcgcaagcgcaagcgcgacagc
gacgccggctcctccacgccgaccacgagcacgcgcagccgcgacaaggacgaggagagc
aagaagcagaagaagcgcgggcggccgccggccgagaagctgtcgcccaacccgcccaac
ctcaccaagaagatgaagaagatcgtggacgccgtcatcaagtacaaggacagcggcagc
gggcggcagctgagcgaggtcttcatccagctgccgtcgcgcaaggagctgcccgagtac
tacgagctcatccgcaagcccgtggacttcaagaagatcaaggagcgcatccgcaaccac
aagtaccgcagcctcaacgacctggagaaggacgtgatgctgctgtgccagaacgcgcag
accttcaacctggagggctcgctgatctacgaggactccatcgtgctgcagtccgtgttc
accagcgtgcggcagaagatcgagaaggaggacgacagcgagggcgacgacagcgacgag
gaggaggaggcggaggaggaaggctcggagtcggagtcgcgctccgtcaaggtgaagatc
aagctgggccgcaaggagaagccgcaggaccgcggcaaggcggggcggcggcggccgagc
cggggcgcgcgcgccaagcccgtggtcagcgacgacgacagcgacgaggagcaggaggag
gaccgctcaggaagtggcagcgaggaggactga
DBGET
integrated database retrieval system
