Dipodomys spectabilis (banner-tailed kangaroo rat): 122119678
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Entry
122119678 CDS
T07891
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122119678 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122119678 (Xab2)
03041 Spliceosome [BR:
dsp03041
]
122119678 (Xab2)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122119678 (Xab2)
Spliceosome [BR:
dsp03041
]
Complex B
Other components
Prp19-related factors
122119678 (Xab2)
Complex C
122119678 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
TPR_21
Motif
Other DBs
NCBI-GeneID:
122119678
NCBI-ProteinID:
XP_042549633
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARLSRSERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDQALRLLRKATALPARRAEYFDSSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLC
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQNKILFVRSDASREELAELTQQVNPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKDD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgactctcgcggtccgagcggccggacctggtcttcgaggaagag
gatcttccttacgaagaggaaatcatgagaaaccagttttcagtcaaatgctggctccgc
tacattgagtttaaacagggtgccccaaaaccccggctcaatcagctgtatgaacgggca
ctcaagctgctcccctgcagctataaactctggtaccgctacctgaaggcacgtcgggca
caggtgaaacaccgttgtgtgactgatcctgcctatgaagatgtcaacaactgtcatgag
agggcctttgtgttcatgcacaagatgccccgtctatggctggattactgccagttcctc
atggaccagggacgcgtcacacatacccgccgcacctttgaccgtgccctaagggccctg
cccatcacccagcactctcgcatttggcccctgtacctgcgcttcctacgctcccacccg
ctgcccgagactgccgtgagaggctaccggcgcttcctcaagctgagtccagagagtgcc
gaggagtacatcgagtacctcaagtcgagtgacaggctggacgaggccgcccagcgcctg
gccaccgtggtgaatgatgagcgctttgtgtccaaggctggcaaatccaactaccagctg
tggcatgagctgtgcgacctcatctcccagaacccagacaaggtgcagtccctcaatgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcactggccgactactacattcgcagtggccactttgagaaggcccgggatgtgtacgag
gaggctatccgcacagtgatgaccgtacgggacttcacgcaagtgtttgacagctatgcc
cagtttgaggaaagcatgattgctgccaagatggagacggcctcggagctggggcgggag
gaggaagacgacgtggacctggagctgcgcctggcccgcttcgagcaactcatcagccgg
cggcccctgctgctcaacagtgtcctgctgcgtcagaacccacaccatgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgtccccgggagatcatcaacacgtacaccgag
gcagtgcagactgtagaccccttcaaggccacaggcaagccccacacattgtgggtcgcc
ttcgccaagttttatgaagataacgggcagctggatgatgcccgagtgatcctagagaaa
gccaccaaggtgaacttcaagcaggttgatgacctggccagcgtgtggtgccagtgtggt
gaactggagctccggcatgagaattatgaccaggccttgcggctgctgcggaaggccaca
gcactgcccgcccgccgagccgagtactttgacagctcagaacctgtgcagaaccgcgtg
tacaagtctttgaaagtgtggtcaatgctcgccgacctggaggagagtctgggcaccttc
cagtccaccaaggccgtgtacgaccgcatcctggacctgcgcatcgccacaccacagatc
gtcatcaactatgccatgttcctggaggaacacaagtacttcgaggagagcttcaaggcg
tacgagcgcggcatctccctgttcaaatggcccaatgtgtcggacatctggagcacctac
ctgaccaagttcatcgcccgctacgggggccgcaagctggagcgggcacgtgacctgttc
gagcaggcgctggacggctgtccccccaaatacgccaagaccctgtacctgctgtatgca
cagctagaggaggagtggggcctggcccggcatgccatggccgtgtacgaccgcgccacg
cgtgccgtggaacctgctcagcagtacgacatgttcaacatctacatcaagcgggctgcg
gaaatctatggcgtcacgcacacgcgtagtatctaccagaaagccatcgaggtgctgtgc
gatgagcacgcccgggaaatgtgcctgcgcttcgctgacatggagtgcaagctgggcgag
atcgaccgtgcccgggccatttacagcttctgctcccagatctgcgacccccggaccaca
ggggcgttctggcagacgtggaaggactttgaggtgcggcatggcaacgaggacaccatt
agggaaatgctgcggatccgccgcagcgtgcaggccacctacaacacgcaggtcaacttc
atggcctctcagatgctcaaggtgtcgggcagcgccacgggcactgtctccgacctggcc
cctggacagagtggcatggatgatatgaagcttctagaacagagagctgagcagcttgca
gccgaggccgagcgggaccagccctcacgggcccagaacaagatcctctttgtgaggagc
gacgcgtcccgagaggagctagcggagctgacccagcaggtcaaccccgaggagatccag
ctgggtgaagatgaagacgaagacgagatggacctggagcctaatgaggtccggctagag
cagcagagcgtgccagctgcagtgtttgggagcctgaaggacgactga
DBGET
integrated database retrieval system
