Dipodomys spectabilis (banner-tailed kangaroo rat): 122119947
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Entry
122119947 CDS
T07891
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122119947 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsp03400
]
122119947 (Lig3)
Enzymes [BR:
dsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122119947 (Lig3)
DNA repair and recombination proteins [BR:
dsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
122119947 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
122119947
NCBI-ProteinID:
XP_042549932
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MKFWPLRNWKPSLSCLLSPTLLCSYMTLAFKIFFPQNLRALGRKELCLLRKQYHWPEIRQ
FSQWSETALLRGHSLFQRRKPVQSFQGGHLRPLATHLVFLPGSHVGLCSGPCEMAEQRFC
VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATT
KKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTSTGQVASPVKG
AAVTTSTNPRKFSGFSAKPNNSEQDPSNPTTKTSLSSSRCDPKHKDCLLREFRKLCAMVA
DNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIF
NCNPDDMARDLEQGDVSETIRVFFEQSKSFPPASKSLLTIQEVDEFLLLLSRLTKEDEQQ
QALQDIASRCTGNDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERV
LLNEQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERV
QVHKDGDHFSYFSRSLKPVLPHKVAHFKDYIPLAFPGGHSMILDSEVLLIDNQTGKPLPF
GTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMK
RVTKASDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVV
LGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDP
SKIPSWLKINKIYYPDFIVPDPKKAAVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDK
DWKSATNLPQLKELYQLSKERADFTVVAGDEGSSTTGGSSGENEGTSGSAASRTTPKGSP
KKPSTSARKAEGKLNNPSSKNVGNRPATKPSPVKLGANPSLKFSPVKVGEKRKATDETPC
QTKVKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDIASATHVLGSGDKNCK
AQVVSPEWIWACIRKRRLVAPC
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgaagttctggcctttgagaaactggaagcctagcttgtcctgtcttttgtctcccacg
cttttgtgcagctatatgactttggctttcaaaatcttcttcccacaaaacctccgtgca
cttggcaggaaagagctgtgtctgctccgaaagcagtatcactggcctgaaataagacaa
ttcagccagtggtcagaaactgctctgcttcgtgggcactcccttttccagagaagaaag
cctgttcagtcattccaaggaggccatttgagaccacttgccacccaccttgttttcttg
ccaggctcgcatgtgggactctgtagtggcccctgtgagatggccgagcaacggttctgt
gtggactacgccaagcgtggcaccgccggctgcaaaaaatgcaaggaaaagattgtcaag
ggcgtgtgtcgaattggcaaagtggtacccaatcccttttctgagtctggcggtgatatg
aaagagtggtaccacattaaatgcatgtttgagaaattggaacgggctcgggccaccaca
aaaaaaattgaggacctcacagagctggaaggctgggaagagctggaggacaacgaaaag
gagcagataacccaacacattgcagatctgtcttcaaaggcagcaggcacaccaaagaag
aaagctgtggtccaggctaagttgacaagcactggccaagtggcatccccagtgaaaggt
gctgcagttaccaccagtaccaatccccggaaattctctggcttctcagctaagcccaac
aactctgagcaagacccctcgaaccctactactaagacaagcctgtcttcaagcagatgt
gaccccaagcacaaagattgtctgttaagggagtttcggaaattgtgtgccatggtggct
gacaatcctagctacaacacaaagacccagatcatccaggacttcttgcggaaaggctca
gcaggagatggcttccacggggatgtgtacctaacagtgaagctgttgctgcctggtgtc
attaagagtgtttacaacttgaatgataagcagattgtaaagcttttcagccgcattttt
aactgcaacccagatgacatggcacgggacctagaacagggtgacgtgtcagagacgatc
agagtcttctttgagcagagcaagtcttttcccccagcttccaagagccttctcaccatc
caggaagtggatgaattcctcctgctgctctccaggctcaccaaggaggatgagcagcag
caggccctgcaggatattgcctccaggtgcacaggtaatgacctcaagtgcatcatcaga
ctgatcaaacacgatctgaagatgaactcgggtgcaaaacatgtgttagatgctctggat
cccaatgcctatgaagccttcaaagcttcacgtaacctgcaagatgtggtggagcgggtc
ctgctcaatgagcaggaggtggaaaaggagccaggccagagacgggccctgagtgttcag
gcctcactaatgacacctgtgcagcccatgctggctgaggcctgcaagtccatcgagtat
gcaatgaagaaatgtcccaacggcatgttctctgagatcaagtatgacggcgaacgagtc
caggtccataaggatggagaccacttcagctacttcagccgcagtctcaaacctgtcctg
cctcataaggtggcccacttcaaggactacatccccttggcttttcccgggggccacagc
atgatcttggactcagaggtgctcctgattgacaaccaaacaggcaaaccactacccttt
gggactctgggagtgcacaagaaagctgccttccaagatgctaatgtctgcctgtttgtt
tttgactgtatctattttaatgatgtcagcttgatggacaggcctctctgtgagcggagg
aagtttcttcatgacaacatggttgaaattcctaaccggatcatgttctcagaaatgaag
cgagtcacaaaagcctctgacttggccgacatgatcaaccgggtgattcgggaagggctg
gaagggctagtgctgaaggatgtgaagggcacatatgaacctggaaagcggcattggcta
aaagtgaagaaagactatttgaatgagggggcgatggccgacacagctgacctagtggtt
cttggggccttctatgggcaggggagcaaaggtggcatgatgtccatcttcctcatggga
tgctatgaccctagcagccagaagtggtgtactgtcactaagtgtgcaggaggccatgat
gatgccacacttgcccgcctgcagaaggagctagacatggtgaagatcagcaaggatccg
agcaaaatacccagctggctgaagatcaacaagatctactatcctgacttcattgttcca
gacccaaagaaagctgcagtgtgggagattacaggggcagaattctccaaagccgaggct
cacacagcagatgggatctccatccgattccctcgctgcacccggatccgggatgacaag
gactggaagtctgccactaacctcccccaactcaaggaactctatcagctgtccaaggag
agggcagacttcactgtagtggctggagatgaggggagctccactacaggaggcagcagt
ggcgagaatgagggcacctctggatctgctgcatctcgcacgactcccaaaggctccccc
aaaaaaccctctaccagtgccaggaaggctgaagggaaactgaataaccccagcagcaaa
aatgtaggcaacaggcccgctacaaagccttcccctgtgaaattgggagcaaatccatcc
ctaaagttttctccagtgaaagtaggggagaagaggaaagctactgatgagaccccatgc
caaacaaaggtgaaggtgctactggacatcttcactggggtgcggctctatttgccaccc
tccacaccagacttcagtcgtctccggcgctactttgtggcattcgacggggacctggta
caggaatttgacattgcctctgccacacatgtgctgggtagtggggacaagaactgcaaa
gcccaggtggtctccccagagtggatttgggcatgtatccggaaacggaggctggtagct
ccctgctag
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integrated database retrieval system
