Dipodomys spectabilis (banner-tailed kangaroo rat): 122120311
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Entry
122120311 CDS
T07891
Symbol
Pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03015
mRNA surveillance pathway
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122120311 (Pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
122120311 (Pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122120311 (Pabpc1l)
03041 Spliceosome [BR:
dsp03041
]
122120311 (Pabpc1l)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122120311 (Pabpc1l)
mRNA cycle factors
Stress granule specific factors
122120311 (Pabpc1l)
Spliceosome [BR:
dsp03041
]
Complex C
Other components
Complex C specific factors
122120311 (Pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_7
RBD_DEAH11
RRM_Nup35
RRM_occluded
xRRM
STAT_bind
TEX47
DUF6262
Motif
Other DBs
NCBI-GeneID:
122120311
NCBI-ProteinID:
XP_042550462
LinkDB
All DBs
Position
Unknown
AA seq
641 aa
AA seq
DB search
MHAGGQGYPLASLYVGDLHPDVNEAMLYETFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCNEHGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRRERE
AELGAQALEFTNIYVKNLHPDMDEQGLEDLFSQFGKMVSVKVMRNSSGQSRGFGFVNFEK
HEEAQKAVDHMNSQEVSGRLLYVGRAQKRAERQNELKRKFEQMKQDRQNRYQGVNLYVKN
LDDSITDEKLRKVFSPYGVITSAKVMTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYIQRLSTIQALDRSLLGSFQQPSYFLPAVPQVTVCPQLL
PRPFPHDSQEEQEDRVSQANPPAQAAYYGSSSMTPIQATHRWTAQPQRPSSASVVQPPGT
LQRSRAQVSSARRASAQVPRPVPHTQRVANIGTQTTGSSRTGCCTPGRSLLPYKCSSAMH
NACGVQEPAVYVPGQEPLTASMLAAAPLHEQKQMIGERLYPLIYDVHNQLAGKITGMLLE
IDNSELLLMLESPESLKAKIEEAVAVLHTHQAMEPLKAYTN
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcacgccggaggccagggctacccgctcgcctcgctctacgtgggcgacctgcacccc
gacgtgaacgaagccatgctctacgagaccttctcgcctgcaggccccatcctgtccatc
cgcgtgtgccgtgacgtggccacccggcgctcgctgggctatgcctacatcaacttccag
cagccggcagacgcggaacgggcattggacactatgaactttgaggtgatcaagggtcaa
cccattcgaatcatgtggtcccatcgagacccagggcttcgaaagtcaggtgtgggcaac
atcttcatcaagaacctggaggattcgattgacaacaaggctttgtatgacaccttctcc
acctttgggaatatcctctcttgcaaggtggtgtgcaatgagcatggctcccggggcttc
ggctttgtgcactttgagacccacgaggctgcacagcaggctatcagcaccatgaatggg
atgctgctcaatgaccgcaaagtcttcgttggccacttcaagtctcgacgggaacgggag
gcagagctgggagctcaggccctagagttcaccaacatctatgtgaagaatctccatcca
gacatggatgagcagggcttggaggatcttttctcccagtttggaaagatggtgagtgtg
aaagtgatgaggaacagcagcggccagtcccggggctttggctttgtcaactttgagaag
catgaggaagcccagaaggctgtggaccacatgaacagccaggaggtgagcgggcggctg
ctgtacgtgggccgtgcccagaagagggcagagcggcagaatgagctcaaacgcaagttt
gagcagatgaagcaggatcggcagaaccgttaccagggtgtgaacctatatgtgaagaac
ctggatgactccatcactgatgagaagctgaggaaagtgttctctccctacggagtgatt
accagtgccaaggtgatgacagagggtagccacagcaaggggtttggctttgtgtgtttt
tcctctccagaagaggcgacaaaggccgtgacagagatgaatggacgcatcgtgggcacc
aagccactgtatgtggcactggcccaacgcaaagaggagaggaaggccatcctgaccaac
cagtacatccagcgcctctccaccatacaggccctggaccgctcccttttagggtccttt
cagcagcccagctactttctgcccgctgtgccccaggtgacagtttgcccacagctcctg
ccacgacctttcccccacgacagccaggaagagcaggaagatagagtttcacaggccaat
cctccagcccaggcggcatattatggctctagctccatgacccctatccaggctacccac
aggtggacggcccagccacagagaccttcatctgcctcagtggtccagccaccaggcacg
cttcagcgctcccgggcccaagtcagcagtgccaggcgggcatctgcccaggttccacgc
ccagtgccccacacccagagagtggccaacattggaacccagaccacaggctctagcaga
acaggctgttgtacaccaggccggtctctcctgccatacaaatgttcctcagctatgcac
aatgcctgtggggtccaggagcctgctgtgtatgtccctggccaggagcccctgactgcg
tccatgctggctgcagcgcccctgcatgagcaaaagcagatgattggggagcgactctac
cccctcatctatgatgttcataaccagctggctggcaaaatcacgggcatgctgctggag
atcgacaattcggagctgctgcttatgctggagtctccagagtccctcaaggccaagatt
gaagaggcggtggcagtcctgcacacgcaccaggccatggagccactaaaggcatacaca
aactga
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integrated database retrieval system
