Dipodomys spectabilis (banner-tailed kangaroo rat): 122121144
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Entry
122121144 CDS
T07891
Symbol
Col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04151
PI3K-Akt signaling pathway
dsp04510
Focal adhesion
dsp04512
ECM-receptor interaction
dsp04820
Cytoskeleton in muscle cells
dsp04974
Protein digestion and absorption
dsp05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122121144 (Col6a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122121144 (Col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122121144 (Col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122121144 (Col6a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122121144 (Col6a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
122121144 (Col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dsp04147
]
122121144 (Col6a1)
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122121144 (Col6a1)
Exosome [BR:
dsp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122121144 (Col6a1)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122121144 (Col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
122121144 (Col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
VWA_CoxE
Rv1476
Motif
Other DBs
NCBI-GeneID:
122121144
NCBI-ProteinID:
XP_042551246
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MRPGLALLSLLLQAGWAAAQDDVGTAKPIAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKAFTKRFIDNLRDRYYRCDRSLVWNAGALHYSDEVEIIRGLTRMPGGQDELKASVDAI
TYFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGVKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRGAEEVITQTIDTIVDMIK
NNVEQVCCSFECQPARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGYPGLPGCKGSPGFDGIQGPPGP
KGDAGSFGLKGEKGEAGADGEAGRPGNLGPPGDEGEPGEPGPPGEKGEAGDEGNAGPDGA
PGERGGPGERGPRGTPGMRGPRGEPGEAGPQGDQGREGPVGVPGDPGEAGPVGPKGYRGD
EGPPGPEGPRGAPGPVGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRGPPGLNGTK
GYPGLKGDEGEAGEPGEDNNDISPRGVKGAKGYRGPEGPQGPPGHVGPPGPDECEILDII
MKMCSCCECKCGPIDILFVLDSSESIGLQNFEIAKDFIIKVIDRLSRVELVKFEPGQSHA
GVVQYSHNQMQEHVDMRSPNIRNAQEFKEAVKKLQWMAGGTYTGEALQYTRDRLLPPTQN
DRIVLVITDGRSDTQRDTTPLNVLCGPDIQVVSVGIKDVFGFAAGSDQLHVISCQGVLSQ
GRPGISLVKENYAELLDDGFLKNITTQICIDKKCPDYTCPITFSSPADITILLDGSASVG
SHNFDTTKHFAKRVAERFLSAGRESAAHTVRVAVVQYSGQGQQQPGRAALQFLQNYTVLA
GTVDSMDYFNDATDVNDALSYVTRFYREASSGAAKKRLLLFSDGNAQGATPAALEKAVQE
AQRAGIEIFVVVVGHQVNEPHIRVLVTGKTAEYDVSFGERHLFRVPSYQALLRGVYYQTV
SRKVALG
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaggcccggccttgcgctgctgtccctgctgctgcaggccggctgggcggccgcccag
gacgatgtggggaccgcaaagcccatcgccttccaagactgccccgtggacctgttcttc
gtgctggacacctctgagagcgtggccctgcggctgaagccctacggtgccttggtggac
aaggtcaaggccttcaccaagcgcttcatcgacaacctgagagacaggtattaccggtgc
gaccgcagcctggtgtggaacgcaggggcactgcactacagcgacgaggtggagatcatc
cgtgggctcacacgcatgcccggcggccaggacgagctcaaggccagcgtggacgccatc
acgtactttggcaagggcacctacacggactgcgccatcaagaaggggctggaggagctg
ctcatcgggggctcccacctgaaggagaacaagtacctgatcgtggtgacggacgggcac
cccctggagggctacaaggagccctgcgggggcctggaggacgcagtgaacgaagccaag
cacctgggcgtcaaggtcttctccgtggccatcacacccgaccacctcgagccacgcctg
agcatcatcgccaccgaccacacctaccggcgcaacttcacggcagcagactgggggcag
agtcgtggggccgaggaggtcatcacccagaccatcgacacgatcgtggacatgatcaaa
aacaatgtggagcaagtgtgctgctccttcgagtgccagcctgccagaggacctccaggg
ccccggggtgaccctgggtatgagggtgagcgaggaaagccaggtctccctggagagaaa
ggagaagctggagacccgggacggcctggagacctgggacccgtcgggtaccagggcatg
aagggagaaaagggaagccgcggggagaagggctccaggggtcccaaaggctacaagggc
gagaagggcaagcgtggcatcgacggggtggacggcatgaagggggagacagggtaccca
ggcctgcccggctgcaagggctcacccggatttgacggcattcaaggaccccctggccct
aagggtgacgccggttccttcggactgaaaggagaaaagggggaagccggagcagacggg
gaagctggaagacccggaaacttggggccaccgggagacgagggcgaacccggagagcct
gggccccccggagaaaaaggagaggccggcgatgagggcaacgctggtcccgacggcgcc
ccgggggagcggggcggccctggagagagaggacctcgggggaccccgggcatgcggggg
ccacggggagagccgggtgaagctggaccccaaggtgaccaaggaagagaaggtcctgtt
ggtgtcccaggagacccgggtgaggctggccccgttggacctaaggggtaccgtggtgac
gagggtccccccgggcctgaggggcccagaggcgccccaggacctgtcggacccccagga
gacccggggctaatgggtgaacggggtgaagacggtccccctggaaatggcaccgagggc
ttccccggctttcctggttatccaggcaacagaggtcccccagggctgaacggaacgaaa
ggctaccctggcctcaagggagatgaaggagaagctggagagcctggagaggataacaat
gacatttcaccacgtggggtcaaaggagcaaaagggtaccgaggcccggaaggcccacag
ggacccccaggacacgtgggaccacctggaccggacgagtgtgagattctcgacatcatc
atgaaaatgtgctcctgctgtgagtgcaagtgtgggcccatcgacatcctcttcgtgctg
gacagctccgagagcatcggcctgcagaactttgagatcgccaaggacttcatcatcaag
gtcattgaccgtctgagcagagtcgagctggtcaagtttgagccgggacagtcgcacgct
ggcgtggtgcagtacagccacaaccagatgcaggaacacgtagacatgaggagccccaac
atccgcaacgcccaggagttcaaggaagctgtgaagaagctgcagtggatggcaggcggc
acgtacaccggggaggctctgcagtacacgcgggaccggctgctgccgcccacccagaat
gaccgcattgtcctggtcatcaccgacggacgctcagacacccagagagacaccacgccc
ctcaacgtgctgtgcggccctgacatccaggtggtctctgtgggcatcaaagacgtgttt
ggcttcgcggccggctctgaccagctccacgtcatctcctgccaaggtgtgctgtcccaa
ggccggcccggcatctctctggtgaaggaaaactacgcagagttactggacgacggcttc
ctgaagaacatcaccacccagatctgcatagacaagaagtgtccagattacacctgcccg
atcaccttctcctccccggccgacatcaccatcctgctggacgggtcagccagcgtgggc
agccacaactttgacaccaccaagcactttgccaagcgcgtggccgagcgcttcctctcg
gccggccgtgaatcggctgcccacacggtgcgcgtggccgtggtgcagtacagcggccag
ggccagcagcagccggggcgggcggccctgcagttcctgcagaactacacggtgctggcc
ggtaccgtggacagcatggactacttcaacgacgccacggacgtcaacgacgccctcagc
tacgtgactcgcttctaccgtgaggcgtcatccggcgctgccaagaagaggctgctgctg
ttctctgacggcaatgcgcagggggccacgccggcggccctggagaaggccgtgcaggag
gcccagcgcgcgggcatcgagatcttcgtggtggtggtgggtcaccaggtgaacgagccc
cacatccgcgtgctggtcacaggcaagacggctgagtacgacgtgtccttcggcgagcgc
cacctgttccgcgtgcccagctaccaggccctgctccgcggtgtctactaccagaccgtc
tccagaaaggtggcgctgggctag
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