Dipodomys spectabilis (banner-tailed kangaroo rat): 122121414
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Entry
122121414 CDS
T07891
Symbol
Ube4b
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04120
Ubiquitin mediated proteolysis
dsp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122121414 (Ube4b)
04120 Ubiquitin mediated proteolysis
122121414 (Ube4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dsp04121
]
122121414 (Ube4b)
Enzymes [BR:
dsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122121414 (Ube4b)
Ubiquitin system [BR:
dsp04121
]
Ubiquitin ligases (E3)
U-box type E3
122121414 (Ube4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DUF4568
Motif
Other DBs
NCBI-GeneID:
122121414
NCBI-ProteinID:
XP_042551572
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGQTSQPTTPLTSPQRENPPGPPIAASAPGPSQSLGLNVHNM
TPATSPIGAAGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDGVSCEKSMSQV
DVDSGIENMEVDENDRREKRSLSDKELSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFL
SSLSAQFKQNPKEVFSDFKDLIGQILMEVLMMSTQTRDENPFASLTATSQPIAAAARSPD
RNLMLNTGSNSGTSPMFCNLGSFSASSLSSLGASGGASNWDSYSDHFTIETCKETDMLNY
LIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSMQQPSFLV
PYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDYFKYPLMALG
ELCETKFGKTHPVCNLVASLPLWLPKSLSPGSGRELQRLSYLGAFFSFSVFAEDDAKVVE
KYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSVLLNGETREAALGYMAAVVNANI
KKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPNDETRVNA
TMEDVNDWLSELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRT
VEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFYGL
LIQLLLRILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQVLYEPCTQ
DIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPS
LMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYINM
LINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLAL
ATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPK
KLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAE
KVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDP
FNRQTLTESMLEPVPELKEQIQAWMREKQSSDH
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctcagcgctgacgagattcggcggaggcgtctggcgcgacttgctggtgga
cagacttcccagccaactaccccacttacctctccccagagggagaaccctcctgggcct
ccaatagcagcatcagctccaggcccttcccagagtcttggtctcaatgtccacaacatg
accccagctacctccccgataggtgcagcaggagtcgcccatcggagccagagcagtgag
ggagttagttctctcagcagctcaccttccaacagccttgagacgcaatctcagtccctc
tcacgttcccagagcatggatatcgacggtgtctcttgtgagaaaagcatgtcccaggtg
gatgtggattcaggaattgaaaatatggaggttgatgaaaacgaccgaagagaaaaaagg
agcctcagcgacaaggagctttcttcaggccctgaagtatccgaagagcaggccttacag
ctggtctgtaagatctttcgtgtctcttggaaggaccgggacagagatgtcatctttctt
tcttctctttctgctcagtttaagcagaacccaaaggaagtgttctctgactttaaggat
ttgattggccagattttaatggaagtgctaatgatgtccactcagactcgagatgaaaat
ccatttgccagtctgacagccacgtcacagcccattgcagctgcagcgcggtcaccagat
agaaatctcatgttgaacactggctccaattcgggaacaagccccatgttctgcaacttg
ggatccttcagtgccagctcattatctagtttgggagcctctggtggagcaagtaattgg
gattcctacagtgaccatttcaccattgaaacctgcaaggagacagatatgctgaactac
ctcatcgaatgctttgaccgagttggaatagaagaaaaaaaagcaccaaagatgtgcagc
cagccagcagtcagccagctcctgagcaacatccgctcacaatgcatatcgcacaccgca
ttagtactccaaggttccctaacacagcctagatccatgcagcagccgtccttccttgtg
ccctacatgctgtgcaggaatctcccatacggctttattcaagaactggtgaggaccact
catcaggatgaagaagtgttcaagcagatctttattcccattttacaaggcctggctctt
gctgccaaagagtgctcacttgatagtgactactttaaataccctcttatggcattaggt
gaactctgtgaaactaagtttggaaagacacaccctgtgtgtaatttggttgcctctttg
cccttgtggttgccgaagtccttaagccctggctccgggagggagctgcagagactgtct
tacctgggggccttctttagcttctcagtctttgcagaagatgatgctaaagtggtagaa
aaatatttctcaggtcctgccattaccctggaaaacacccgtgtggtcagccaatcacta
cagcattacttggagttgggaaggcaagagcttttcaagattctgcatagcgttctgttg
aatggtgaaacccgtgaagctgccctgggttacatggcagctgtcgtcaatgccaatata
aagaaagcacagatgcagacagatgatagattggtatctacagatggatttatgctcaat
ttcctttgggtactacagcagctaagtacaaaaatcaagttagaaacagttgatcccaca
tatatattccacccaagatgtcggattacactccccaatgatgagacgcgagtgaatgca
acaatggaggatgtgaacgactggctgagtgaactttatggagaccagcctccattttct
gagccaaaattccccacagaatgcttctttctcaccctacatgcccaccacctctctatt
ctgcccagttgtcgtcgctacatccgcagactccgcgccatccgggagctgaataggact
gtagaagatttgaaaaataatgaaagccagtggaaagattctcccctggcaactagacat
cgtgaaatgttgaaacgctgtaaaactcagctgaagaaactggtacggtgcaaggcctgt
gctgacgctggcttacttgacgagagcttcctgagaagatgtctgaatttttatggcctt
ctcattcagctgctgctccgcatcctggaccctgcataccccgacataacactgccttta
aattcagatgtccccaaggtatttgcagcgttgcctgagttttatgtagaagatgttgct
gaatttttattttttattgttcaatactctcctcaggtgctttatgagccctgtactcag
gatattgtgatgttcctcgttgtgatgttgtgcaaccagaactacatccggaatccatac
ctagtggccaaactggtagaagttatgtttatgaccaaccctgctgtccagccacgaacc
cagaaattttttgagatgattgagaaccatcctctctctaccaagttactggtaccttct
ctgatgaagttctatacagacgtggagcacactggagctaccagcgagttctatgacaag
ttcacaatccgctatcacattagtaccatttttaaaagcctttggcaaaacattgctcac
catggcacctttatggaagagttcaattctgggaagcagttcgtgcgctacataaacatg
ttgataaacgatacgacgtttttgctcgatgaaagtctggagtcgctgaagcggatccat
gaagtgcaagaagagatgaagaacaaagagcagtgggaccagctgcctcgggatcagcag
caggcccggcagtctcagcttgctcaggatgagcgcgtttcacgctcttacctcgcgttg
gcaacagaaaccgtggatatgttccacatcctcacgaagcaggtccagaagccattcctc
agaccagaacttggaccccgattggctgcgatgctgaactttaatctacagcagctctgt
ggccccaagtgtcgtgacttgaaggtggagaacccagagaagtatggctttgaacccaag
aagctgttggaccaactgacagatatttacctgcagctggactgtgctcggtttgcgaag
gccattgccgacgaccagagatcctacagcaaggaactgtttgaagaagtaatttccaag
atgcggaaggcagggattaaatccacaatagcaatagagaagtttaagcttcttgccgag
aaagtagaggagatagtggccaagaacgcccgggcagaaatcgactacagtgatgctccg
gatgagtttagagaccctctgatggacaccctgatgactgaccccgtgcggctgccctct
ggcaccatcatggaccgctccatcatcctgcggcacctgctgaactctcccactgacccc
ttcaaccgccagacactgacagagagcatgctggaaccagtgccagaactgaaagaacag
atccaggcatggatgagagagaagcagagcagcgatcactaa
DBGET
integrated database retrieval system
