Dipodomys spectabilis (banner-tailed kangaroo rat): 122121502
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Entry
122121502 CDS
T07891
Symbol
Clstn1
Name
(RefSeq) calsyntenin-1
KO
K22659
calsyntenin 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
dsp04515
]
122121502 (Clstn1)
Cell adhesion molecules [BR:
dsp04515
]
Cadherins
Cadherin related
122121502 (Clstn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
FAM176
Toxin_R_bind_N
EphA2_TM
V_ATPase_I
Cadherin_C_2
UQ_con
SID-1_RNA_chan
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
122121502
NCBI-ProteinID:
XP_042551705
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MLRRPAPPLAPAAGLLLAGLLCGGGVWAARVNKHKPWLEPTYHGIVTENDNTVLLDPPLI
ALDKDAPLRFAESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGIIRSKEKLDCEL
QKDYTFTIQAYDCGKGPDGTGVKKSHKATVHIQVNDVNEYAPVFKEKSYKATVVEGKQYG
SILRVEAVDADCSPQFSQICSYEIITPDVPFTVDKDGYIKNTEKLNYGKEHQYKLTVTAY
DCGKKRATEDVLVKISIKPTCTPGWQGWSNRIEYEPGTGALAVFPNIHLETCDEPVASVQ
ATVELETSHIGKGCDRDTYSEKSLHRLCGAAAGTAELLPSPSSSLNWTIGLPTDNGHDSD
QVFEFNGTQAVRIPDGIVSLNPKEPFTISVWMRHGPFGRKKETILCSSDKTDMNRHHYSL
YVHGCRLIFLLRQDPSEEKKYKPAEFHWKLNQVCDEEWHHFVLNVEFPSVTLYVDGVSHE
PFSVTEDYPLHPTKIETQLVVGACWQEYSGVESDNETEPVTLASAGGDLHMTQFFRGNLA
GLTVRSGKLADKKVIDCLYTCKEGLDLQVPDDGGRGVQIQASPSQSVLTLEGDDIGELDK
AMQHVSYLNSRQFPTPGIRRLRITSTVKCFNEAACIEVPPVEGYVMVLQPEEPKISLSGI
HHFARAASEFESSEGVFLFPELRIISTITREVEPEGDGAEDPTVQESLVSEEIVHDLDTC
EVTVEGEELNPEQESLEVDVARLQQKGIEVSRSGLGVVFTGVDTMASYEELLHLLRYRNW
HTRSLLDRKFRLICSELNGRYLSNEFKVEVNVIHTANPMEHANHMAAQPQFVHPEHRSFV
DLSGHNLANPHPFAVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDTGKENE
MDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEESEDGEEEEDITSAESESSEEEEGGP
GDGQNATRQQQLEWDDSTLSY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccgccccgcgcccccgctggccccggccgccgggctgctgctggccgggctg
ctgtgcggcggcggcgtctgggccgcgcgagttaacaagcacaagccatggctcgaaccg
acctatcatggaatcgttaccgagaacgacaacacagtgctgcttgatcctcccctcatc
gccctggataaagatgcccctctgcgttttgcagagagttttgaggtgacagtcaccaaa
gaaggtgagatctgtggctttaaaattcatgggcagaatgtcccttttgatgcagtggta
gtggataagtccacgggtgaggggataattcgttcaaaagagaaactggactgtgagctg
cagaaagactacacattcaccatccaggcctatgactgcgggaagggaccggatggcacc
ggcgtgaagaaatctcacaaagcaactgtccatatccaggtgaatgatgtgaacgagtat
gcgcccgtgtttaaggagaagtcctacaaagcgactgttgtggaggggaagcagtatggc
agcatcctgagggtggaggctgtggatgcagactgttcccctcagttcagccagatctgc
agctatgagatcatcactccggacgtgccgtttactgtggacaaagacggttatataaaa
aacacagagaagctaaactatgggaaagagcatcagtacaagctgacagtaactgcatat
gactgtgggaagaagagagccacagaagatgtcctggtgaagatcagcatcaagcccacc
tgcactcctgggtggcaaggctggagcaataggattgagtatgagcctggcacaggagct
ttggctgtcttcccaaacatccacctggagacatgtgatgagccagttgcttcagttcag
gccacagtggaattggagaccagccacatagggaaaggctgtgaccgagacacctactct
gagaaatcccttcaccggctctgtggggctgctgctggcacggccgagctgcttccctct
cccagcagctccttgaactggaccattggactccctaccgacaacggccacgatagcgac
caggtattcgagttcaatggcactcaggcagtgaggatcccagatggcattgtgtctctc
aaccccaaagagccctttacaatttctgtatggatgcggcatggaccttttggccggaag
aaggagacaattctttgcagttcagacaaaacagatatgaaccgacaccattattcgctc
tatgtccacgggtgcaggcttattttcctcctccgccaggatccttctgaagaaaagaaa
tacaaacctgcagaattccactggaagctgaatcaggtctgtgatgaggaatggcaccac
tttgtcctcaatgtagaattcccgagtgtgactctctatgtggatggggtttcccatgag
cccttctctgtgactgaagattacccacttcacccaaccaagatagaaactcagcttgta
gttggtgcttgctggcaagagtattcaggagttgaaagtgacaatgaaactgagcctgtg
actttggcctctgcaggtggcgacctacacatgacacagtttttccgaggcaaccttgct
ggtctaacagtccgttctgggaagctggcagataagaaggtgattgactgtctgtatacc
tgcaaggaggggctagacctccaggtccctgacgatggcggccgaggcgtgcagatccaa
gcaagccccagtcagtcagtgttgaccttggagggagacgacattggagagttggacaag
gccatgcagcatgtgtcctaccttaactccaggcagttccccacgcctggcatccgaagg
ctcagaatcaccagcactgtcaagtgttttaacgaggccgcttgcattgaggtcccccca
gtcgaaggctacgtgatggttttgcagcctgaggaacccaagatcagcctgagtggcatt
catcattttgcccgagcggcttcggagtttgagagctcagaaggggttttcctcttccct
gagcttcggatcatcagcaccatcacaagagaagtggagcctgagggggatggggctgag
gaccccacagttcaagagtccctggtgtctgaggaaatcgtgcatgacctggatacctgc
gaggtcacagtggagggggaggagctgaaccccgagcaggagagcctggaggtggacgtg
gcccggctccagcagaagggcattgaagtgagccgctcgggcctgggtgtggtcttcaca
ggtgtggacaccatggccagctatgaggagctcctgcacctcctgcgctatcggaactgg
catacccggtccctgcttgaccggaagttcaggctcatttgctctgagctaaatggccgc
tacctcagcaatgagtttaaggtggaggtgaatgtgatccacacggccaaccctatggaa
cacgccaaccacatggctgcacagccgcagttcgttcaccctgaacatcgctccttcgtg
gacctgtcaggccacaacctggctaatcctcacccgtttgcagttgtccccagtacggcc
acggtggtgattgtggtgtgtgtcagcttcctggttttcatgattatcctgggagtgttt
cggatccgggccgcacatcagcgcaccatgcgggaccaggacacggggaaggagaacgag
atggactgggacgactccgccttgactataactgtgaaccccatggagacatacgaggac
cagcacagcagtgaggaggaagaagaggaagaggaagaggaagagagtgaggacggtgag
gaggaagaggatatcaccagtgctgagtcggagagcagcgaggaggaggagggtggcccg
ggagatggccagaacgccactcggcagcagcagctggaatgggacgactccacgctcagc
tactag
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