KEGG   Dipodomys spectabilis (banner-tailed kangaroo rat): 122121626
Entry
122121626         CDS       T07891                                 
Symbol
Shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
  KO
K28108  shortage in chiasmata 1
Organism
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:dsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dsp03036]
    122121626 (Shoc1)
Chromosome and associated proteins [BR:dsp03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    122121626 (Shoc1)
SSDB
Motif
Pfam: DUF5587 DUF3447 RVT_3
Other DBs
NCBI-GeneID: 122121626
NCBI-ProteinID: XP_042551784
LinkDB
Position
Unknown
AA seq 1496 aa
MFSAFRYYAMDYLREDLVRKKVCRGLFLQNPSCLCQDGNNIDDEYRRPWTKVTEVSVQGM
TDDSLLDELKADFFVEDFLEQQTITGIVNPINGVFEEIVPSSNPDSPTNIEDILITLKDD
SATFTSIESLENYPALQAQNRDLNIEDDKINFVNDLVTDKSKLPTLNTVSSRSELLMVKG
LLLDFKEQSTEEADLFREYFSFQEDLEGFLKERFYVDKENFCQKKLVGLHELSTFPSQCE
SLISTNIRQKIDTPSSSEPKESLNFMPEVINYIDDSEKLLQGDLTTTHGVDTENIKSSST
EIVTIQSQSEPECSEPGKLEISLSSLNTISQQFSVNLLHTELQTFSFSPICKISSHIVEE
TVNKYSMPWQLQICRSSLISFLLTGPTIEEPNRQHSVTELRKIFSIEEEGLVISPVKAAC
WKQVGLNPVMTETLEHLNPYLHLDNLSSSDNKMEIHLSKKGLPLESWLEHKSHSLPIIHI
NNKKSKNDHTAFPQKSLSSPNEIPDLHVSEECVSAKRQKREENLKNNQELTGRIIQKKEK
EDNIEPDCSVPSIESSPASKIKKTSFEHDKKQENDLDLLSNFIMLRNKYNTCTSKTEDTD
YDKKDEFQHKEECSLMLQKQSPIVSTNKTLKNINEETVADNVIEIQASDTQCQAFYLLES
AAAPILKKLVSLCPFPAANWKFATVLFDQTRFFLKEQEKVISDNIPQGTNYEREIIYKHA
AVLHLLVTIRDVLLTCNLDTALGYLTNAKDVYQNILGSYLDDIWKQMKIVQFIKDKKPEA
NHKLQELQNQILMWMKSEQQITVLIIIRMNSDNEKHLLTKILNKIEGLTLTAFHSNGEKD
FLESTAVLNGNYCVIVNNQNIGADFPWRSFSFVVEYNHAGHSCWKMHCEKLNIPFVAFKV
ILPDTVLARSTVLDRFGGFILGIQIPYVFFATEGLLNTPEILQLLESNYSITLVERCCSE
SLKLFGSTEYYVVVTIDEHTAIILQDLEELNYERASDNIIMRLMALSFQYSDCWIIIYIK
RTLNSGYHLTEKTLHHLALIYAALVSSGLKSEELDVKLVITPGGEKTASIIRQIADHSLM
SSKRDPHEWLDKSWLEVLPSKEEMYLLDFPCINPLVAQLMLNQVPSLHWLLSATPCQLQE
ILPSVPEKVLKHFCSITSLFKINSSSITKSPPSLSPLEDRNEISNFISQNSASDLSDSAI
QEHNNDYCSYLESEETVKEDTNIPTNYNSSFMELRKTPCILPPVTSYTLTSNLKSFNCSP
NVEQSSPFLINTATKKSVCNSFPNQNDPGSDIFSLGLTQINRETQRGTTPNFINYQKKRP
QGTKEVSAPMFSVEDSLSSWDFRHGNFRKNVCKKQNHSFNLKYGIESTYDKWYSQKDNLL
TNQQESLSDELESFTCESSNIGTTTLWRQLPSVPSLNVFSVSDSNANQKEISSLNMYPRP
GKCSGQKRYLESSSNSGDKEPLTGSMYSKLPPQKKRRLMYEKVPGRSDGQTRLRFF
NT seq 4491 nt   +upstreamnt  +downstreamnt
atgttttcagcattcagatattatgcgatggactatttacgtgaggatttagttagaaag
aaggtctgcagaggtttatttcttcagaatccttcatgtttatgtcaagatggaaacaat
attgatgacgaatataggaggccatggacaaaagtcactgaggtttcagttcagggaatg
acagatgactcactattggatgaattgaaagcagatttctttgtagaagatttccttgag
caacaaacaattacaggaatagtgaatccgattaatggtgtatttgaagagattgttcca
agttccaacccagactctccaacaaacatagaagacatcttaattaccctcaaggatgac
agtgcaacctttacatctattgaaagtttagaaaattatccagcacttcaagcacagaac
cgagatttaaatattgaagatgataaaataaattttgtaaatgatttggtgactgataaa
agtaaactaccaactttgaatactgtttcaagtagatcagaactacttatggtaaaaggc
ctccttttagatttcaaagaacagagcactgaagaagctgatttgtttagggaatatttt
tcttttcaagaagatttggaaggttttttaaaagaaagattttatgtggataaagaaaac
ttttgtcagaagaaattagtaggtttacatgagctatcaacttttccttctcagtgtgaa
tccttaatatctacaaatatcagacaaaaaattgatactccatcatcctcagaaccaaag
gagtcattaaatttcatgccagaagtaataaattatatagatgatagtgaaaaacttttg
caaggagatctcactactacacatggagttgatactgaaaatataaaaagcagttccaca
gaaatagtgactattcaaagtcagagtgaaccagagtgcagtgaaccaggaaaattggaa
atatcactatctagcctcaacacaataagccaacagttttcagtgaatttgttacataca
gaacttcaaacattttcattttctcctatttgtaaaattagttcacatattgttgaagaa
acagtgaacaaatattctatgccatggcaattacaaatctgcagaagctctctcatctca
tttttgcttacagggccaaccattgaagagcccaacagacaacattcagttacagagttg
agaaaaatcttttctatcgaagaagaagggcttgtgattagtcccgtaaaggcagcatgt
tggaaacaagtaggactaaatccagtaatgacagaaactttggaacatctgaatccatat
ttgcaccttgacaatctatcttctagtgataataaaatggaaatacacttgtctaaaaaa
ggacttccattagaatcatggctagaacataaaagtcattccttacctatcatacatatt
aataataagaaatctaaaaatgaccacacagcatttccacaaaagagtctatcttcacca
aatgaaataccagatctgcatgtttctgaagaatgtgtttctgctaaaagacaaaaaaga
gaagaaaacctaaagaataatcaagaactaactggtagaataatccaaaagaaagaaaag
gaagataacattgaacctgactgttcagtaccatctattgaatcatctccagcttcaaaa
attaagaaaacatcttttgaacatgataaaaaacaggagaatgatttggaccttttgagc
aactttattatgctgcgaaataaatataatacttgcacctcaaagactgaagacacagac
tatgacaaaaaagatgaatttcaacataaagaagaatgttctttgatgcttcaaaaacaa
agtcctattgtttctactaacaaaactctcaagaacataaatgaagaaacagtagcagat
aatgtcattgaaattcaagcctcagatactcagtgccaagccttctatctcttagaatca
gcagctgcccccatcttaaaaaaacttgtgtccctttgtccttttcctgctgctaattgg
aaatttgccactgttctttttgaccaaacaaggttcttcttaaaagaacaagaaaaagtg
ataagtgataacatccctcaaggtacaaattacgaaagagaaattatatacaagcatgct
gctgtcctacaccttctggtgacaattagagatgtccttttaacatgcaacttggacaca
gcattgggatatttgacaaatgcaaaagatgtctaccaaaacattttaggctcctacttg
gatgatatttggaaacagatgaagattgtacaatttatcaaagataaaaagcctgaagca
aaccataagttacaagaattgcaaaatcaaatcctaatgtggatgaaaagtgaacaacaa
attactgtgctgattataataagaatgaactcagacaatgaaaaacatttgctcactaaa
atccttaacaaaatagaaggcttaacattgactgctttccattcaaatggagaaaaagac
tttctggaatctacagcagttttgaatgggaattactgtgtaattgtaaataatcaaaat
attggagcagattttccctggaggagtttctcatttgttgtggaatacaatcatgcagga
cattcatgttggaagatgcattgtgaaaagttgaacattccctttgtggcctttaaagtg
attcttccagacacagtcttagccagaagtaccgtgctggatagatttggtggttttatt
ttgggaattcagattccatatgtgttttttgcaactgaaggacttcttaataccccagaa
atacttcaactgctggaatctaactatagtatcacactagtggagagatgctgcagtgag
tcactgaaactctttggaagtacagagtattatgtggtagtaacaattgatgaacacact
gctataattttacaggacctagaagaactgaattatgagagagcatcagacaacatcatt
atgaggctgatggcattatcattccagtatagtgattgttggatcataatatatatcaag
agaaccttaaattcagggtatcatcttacagaaaagacacttcatcacctcgcattgatt
tatgcagctttggtttcttctggccttaaatctgaagaactggatgtaaagcttgtaatt
actccaggaggagaaaagactgcatcaataattcgtcaaattgctgatcacagtttaatg
agctccaaaagagatcctcatgaatggctggataaatcatggcttgaagttttaccatcc
aaggaagaaatgtacttacttgattttccatgcattaacccattggtggctcagctgatg
ttaaatcaagtgccttcgctgcattggctattatcagcaaccccatgtcaacttcaggaa
attctacccagcgttccagaaaaagtgttaaagcatttttgtagcatcacttccttattc
aagattaattcttcctccataacaaaatcacctccaagtttatcacctctggaagacagg
aatgagattagtaactttatttctcagaattcagcttcagacctttcagactctgccatt
caagagcataataatgactattgctcatacttagaatcagaggagacagtgaaggaagac
acaaacatccctacaaattacaactcttctttcatggaactaagaaaaaccccatgtatt
ttacctcctgtgacttcttacactctaaccagcaatttgaaaagctttaattgtagcccc
aatgttgaacaaagcagtccttttctgattaatacagcaaccaagaaatcagtttgtaac
tcctttccaaatcagaatgatcctgggtcagatatcttttctttgggtctaacacagata
aatcgtgaaactcagaggggaacaacccctaatttcataaattatcagaaaaaaagacca
caaggaacaaaagaagtatctgcccctatgttttcagtagaggactctctctcgtcatgg
gactttcgtcatgggaactttaggaaaaatgtatgtaagaaacaaaatcactcattcaac
ttgaaatatggaatagagtctacctatgacaaatggtactctcaaaaagataatttactt
actaatcagcaggagtctctatcagatgaattggaaagttttacatgtgaaagttcaaat
attgggactacgactttgtggagacaattaccatctgttcccagtttgaatgtattcagt
gtttctgactctaatgcaaatcaaaaagaaatcagcagccttaatatgtacccaagacct
ggaaaatgttcaggacagaaaaggtatcttgaatcatcatctaattcaggagacaaggaa
ccattaacagggtcaatgtactcaaaattaccaccacagaaaaaaagacgcctaatgtat
gaaaaagttccaggaagaagtgatggacaaactcggctgaggtttttttga

DBGET integrated database retrieval system