Dipodomys spectabilis (banner-tailed kangaroo rat): 122121924
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Entry
122121924 CDS
T07891
Symbol
Rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04140
Autophagy - animal
dsp04211
Longevity regulating pathway
dsp05010
Alzheimer disease
dsp05014
Amyotrophic lateral sclerosis
dsp05016
Huntington disease
dsp05017
Spinocerebellar ataxia
dsp05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122121924 (Rb1cc1)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
122121924 (Rb1cc1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
122121924 (Rb1cc1)
05014 Amyotrophic lateral sclerosis
122121924 (Rb1cc1)
05016 Huntington disease
122121924 (Rb1cc1)
05017 Spinocerebellar ataxia
122121924 (Rb1cc1)
05022 Pathways of neurodegeneration - multiple diseases
122121924 (Rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dsp01009
]
122121924 (Rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dsp04131
]
122121924 (Rb1cc1)
03029 Mitochondrial biogenesis [BR:
dsp03029
]
122121924 (Rb1cc1)
Protein phosphatases and associated proteins [BR:
dsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122121924 (Rb1cc1)
Membrane trafficking [BR:
dsp04131
]
Autophagy
Autophagosome formation proteins
ULK complex
122121924 (Rb1cc1)
Mitochondrial biogenesis [BR:
dsp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
122121924 (Rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
Jag_N
Motif
Other DBs
NCBI-GeneID:
122121924
NCBI-ProteinID:
XP_042552052
LinkDB
All DBs
Position
Unknown
AA seq
1593 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELTVQTVADLKYAIQSKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILCERAPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSDYLQ
SIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSLNEHEGSEKAEMKRSAEL
VLSPDMPRTTNTSLLTSFHKSLEHVASDATDAESDREIKESCQSTIQQDEPSVAAKDSDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFIKECRQTIVKLDNQSMKA
IKGLEDRLYALDQMIASCGRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVKIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKRESFGKL
FRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRIPL
LCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKVSVSQSSPQSASSPRIESATG
ITTTTSPRTPPPLTVQDPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIEQTIHQASLDL
DSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTN
TCGTEDFADHSSLNVQLEKCRVVAQESNFTIQTIKEDLCHFRTFVQKEQCDFSNSLKCTA
IEIKNIIDKVKCSLEITLKEKHQKELQTLKSEYEGKLEALVKESEENEKKIKKLKGDLIC
LEEVLQNKDNEFALIKHEKEAVICMQNEKDQKLLEMENIMHTQDCEIKELKHSQEIVLED
LKKLHAENDEKIELLRAELQCLEQSHLKELEDTLHVRHTQEFEKVMTDHQVSLEKLKQEN
QERIDQIQEFHATTVHEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEES
KTQQKETLKSLLEQETEALRIEINKLNQKIQDNNENYQVGLAELRALMTIEKDQCISELI
SRHEEESNLLKTELDKVTSLHNQAFEIEKNLKEQIVELQIKLNSELSILEKQKDEKFTQQ
EEKYKAVIQSLEKDKETLLTSHEQDKEQLIQKLNCEKDEAIQTALKEFKLEREVVEKELL
EKIKHLENQIAKSPTIESTREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVR
TSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEE
KKKLEEEVSKLRSSSFIPLPHITTAPELYGACAPELPGETERQAMETAEEGRVDSAMETS
MMSVQENLHMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKIAIRDF
QVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGTSRRPWVLGKVME
KEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatatgtgtttttggtcaacactggaacaactctgacatttgatactgaactt
acagtgcagactgtggcagaccttaagtatgctattcaaagcaaatacaagattgctatt
cagcaccaggtgctggtggtcaatggaggagagtgcatggctgcagatcgaagagtatgt
acctacagcgctgggacagacacaaatccaatttttctttttaacaaagaaatgatctta
tgtgaacgtgcacctgctattcctaaaactacgttttcaacagaaaatgacatggaaata
aaagttgaagagtctcttatgatgcctgcagtttttcacactgttgcttcaagaacacaa
cttgcagtggaaatgtatgaagttgccaagaaactttgttctttttgtgaaggtcttgtc
catgatgaacatcttcaacatcaaggctgggcagcaatcatggccaatctggaagactgc
tcaaattcataccagaagctacttttcaagtttgaaagtatttattcagattatttgcaa
tccatagaagacatcaagctaaaacttactcatttaggaactgcagtttcagtaatggcc
aagattccactgttggagtgtctaaccagacatagttacagggaatgtttgggaagactg
gattctttaaatgaacatgaaggctcagaaaaggctgagatgaaaagatctgctgaattg
gtgctctctcctgatatgcctagaacaactaacacatccttgttaacctcatttcacaag
tcattggaacatgtagcttcagatgccacagatgctgaaagtgatagagaaattaaggaa
tcttgtcaaagtacgatccagcaagatgaaccttcagtagctgctaaagacagtgatttg
cccttttttaatgtttctttgttagattggataaatgttcaagatagacctaatgatgta
gaatctttggttaggaaatgctttgattccatgagcaggcttgatccaaagattattcaa
ccttttataaaggaatgccgtcaaactattgtcaaacttgataatcagagtatgaaagct
attaaagggcttgaagatcgactgtatgccttagaccagatgattgctagctgtggccgg
ctggtgaatgaacagaaagagcttgctcagggatttttagctaatcagatgagagctgaa
aatttgaaggatgcatctgtattacctgatttgtgcctgagtcatgcaaatcagttgatg
attatgttgcagaatcatagaaaattgttggacattaaacagaagtgtaccactgccaaa
caagaactagcaaataatctgcatgtcagactaaagtggtgttgctttgtgatgcttcat
gctgatcaggatggagagaaattgcaagcattgctccgccttgtaatagaactgttagaa
agagtcaaaattgttgaagctcttagtacagttcctcaaatgtattgcctagctgttgtt
gaagttgtaaggagaaaaatgttcattaaacactacagagagtgggctggtgctttagtt
aaagatggaaagcagttgtatgaagctgaaaagtccaaaagggaatcctttgggaaatta
tttaggaagtcttttttaagaaaccgtctgtttaggggactggactcctggcccccttcc
ttttgtactcagaagcctagaaagtttgattgtgaacttccggatatttcgttaaaagat
ttacagtttctgcaatcattttgtccttcagaagttcagccattcctcaggattccttta
ctttgtgactttgaacctcttcaccagcatgtacttgccctacacaatttggtaaaagca
gcacaaagtttagatgaaatgtcacagaccattacagatctgctgaatgaacaaaaggtg
tctgtcagtcagtcatccccacaatcggcttcttccccaaggatagaaagtgcaacagga
attacaactactacctcaccaagaactcctcctccactcactgttcaggatcccttatgt
cctgcagtatgccccttagaagaattatctccagatagcattgatgcacatacatttgat
tttgaaactatcccccatccaaacatagaacaaactattcaccaggcttctttagacttg
gattcattagcagagagtcctgagtcagattttatgtctgctgtgaatgagtttgtgata
gaagaaaacttatcatctcctaatcctataagtgatccacagagtccagaaatgatggtg
gaatcactttattcatcagtcatcaatgcaatagatagtagacgaatgcaggatacaaat
acatgtggtacagaggactttgcagatcattcttctctgaatgtacaattggaaaaatgt
agagtcgttgcccaagaatctaacttcactatacagactatcaaggaagatctttgccac
ttcagaacatttgtacaaaaagagcagtgtgacttctcaaattctttaaaatgtacagca
attgaaataaaaaacattattgacaaagtaaaatgctccttggaaataacactaaaagaa
aagcatcaaaaagaactacagactctaaaaagtgaatatgaagggaaacttgaagcacta
gtaaaggagagcgaagaaaatgaaaagaaaattaaaaaactgaaaggagacttaatatgc
cttgaggaggtattacaaaataaagataatgaatttgctctgattaagcatgaaaaagaa
gctgtcatttgtatgcagaatgagaaggatcagaaactgttggagatggaaaatattatg
cacactcaagattgtgaaattaaagaactgaaacactcacaagagatagtgttagaagac
ttgaaaaagctccatgctgaaaatgatgagaaaatagaattattgagggcagaacttcag
tgcttagagcaaagccacctaaaggaattggaggacacactgcatgtcaggcacacacaa
gagtttgagaaagttatgacagaccaccaagtttccttggaaaaattgaaacaggaaaat
caagaaagaatcgatcaaatacaagagtttcatgccacaactgtgcatgaaaaagagcaa
caactacaggagttgaaactcaaggtttctgatttgtcagacatgagatgcaagttagag
gttgaacttgcattgaaggaagcagaaactgatgaaataaaaattttgttggaggaaagc
aaaacacagcagaaagagactttaaaatcacttcttgaacaagaaacagaggctttgaga
atagaaataaataaactaaaccaaaaaattcaagataataatgaaaattatcaggtgggt
ctagcagagctaagagctttaatgactattgaaaaagatcagtgcatttcagagttaatt
agtagacatgaagaagaatctaatctacttaaaactgaattagacaaagtaacatctttg
cataaccaagcatttgaaatagaaaaaaacttaaaagaacaaatagttgaattacagatt
aaattgaactcagaattgagcattcttgaaaaacaaaaagatgaaaaattcacccaacaa
gaagaaaaatacaaagctgttatccagagccttgagaaagacaaagagacattgctcaca
agccatgaacaagacaaagaacagttaatccaaaagcttaattgtgaaaaagatgaagct
attcagactgcactgaaagaatttaaattggagagagaagttgtggagaaagaattatta
gaaaaaattaaacatcttgagaatcaaatagcaaaaagtcctaccattgaatccaccaga
gaagattcttcaagtttagttgccgagcttcaagaaaaacttcaggaagaaaaagctaag
tttctagaacaacttgaagagcaagaaaaaaggaagaatgaagaaatgcaaaatgttcga
acatctttgattgctgagcaacagaccaatttcaacactgttttaacaagggagaaaatg
aggaaagaaaatataatcaatgatcttagtgataaattgaaaagtacaatgcagcaacaa
gagagagataaagatttgatagaatctctttctgaagatagagctcggttgcttgaggaa
aagaagaagcttgaagaagaagtcagtaagttacgtagtagcagttttatccctcttcca
catataactactgccccagagctttatggagcttgtgcacctgaactcccaggtgaaaca
gaaagacaagccatggaaacagcagaggaaggaagagtggattcagcaatggagacaagc
atgatgtctgtgcaagaaaatctccatatgctatctgaagaaaagcagagaataatgctg
ttagaacgaacattacagttgaaagaagaagaaaataagcggttaaaccaaagactgatg
tctcagagcatgtcttcagtatcttcaaggcattctgaaaagatagctattagagatttt
caggtgggagatttggtgctcattatcctagacgagcgccacgacaattatgttttgttt
actgttagccctactttgtattttctgcattcagagtctctgcccgctctcgatctcaaa
ccaggtgagggagcttcaggtacatctagaagaccttgggtacttggaaaagtaatggaa
aaggaatattgtcaagctaaaaaggcacaaaacagatttaaagttcctttagggacaaaa
ttttacagagtgaaagctgtgtcatggaataagaaagtatag
DBGET
integrated database retrieval system
