Dipodomys spectabilis (banner-tailed kangaroo rat): 122122221
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Entry
122122221 CDS
T07891
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122122221 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122122221 (Col13a1)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122122221 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122122221
NCBI-ProteinID:
XP_042552235
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MVAERARGPGELGAPRAVAVAVRAERCARLPSPGSCGLLALALCALALSLLAHFRTAELQ
ARVLRLEAERGERQMETAILGRVNQLLDEKWKLHSRRRREAPKMSPGCNCPPGPPGPTGR
PGLPGNKGSIGMPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLD
GKPGHPGPKGEPGLAGPRGLPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTF
QGEQGQAGVQGPPGPPGPPGPTGPLGHPGLPGPMGPPGLPGPPGQKGDPGIQGYHGRKGE
RGMPGMPGKHGAKGAPGIAVAGMKGEPGTPGAKGEKGASGPPGLSGLLGQKGEKGDAGNS
IGGSRGEPGPPGLPGPPGPKGEAGEDGHAGPPGRQGDKGQPGAAGEQGPAGPKGSKGEPG
KGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGSPGQKGEIGLPGPPGHDGEK
GPRGKPGDLGPAGPQGPPGKDGPPGMKGETGHPGNPGEKGEKGEMGHAGSPGLDGPTGEK
GEPGDQGRPGATGLPGPIGLPGFTGEKGEAGEKGDPGAEVPGPPGPEGPPGPLGLQGVPG
PKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPVGVPGPAGPKGERG
SKGDPGMTGPTGAAGLPGLHGPPGDKGNRGHRGFKGEKGEPGLPGLDGLDAPCPLGEDGL
PVQGCWNK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgcgcccgcggccccggggagctgggcgcgccccgggcggtggcggtg
gcggtgcgggcggagcgctgcgcgcggctgcccagcccggggtcgtgcgggctcctggcg
ctggccctgtgcgcgctagcgctcagcctgctcgcccactttcgaactgcggagttgcag
gcccgggtgctgcgcctggaagcggagcgcggggaacggcaaatggagacggctattttg
ggacgagtcaaccaactgctggacgagaaatggaagctccattcacgcagacgcagggaa
gccccgaagatgtctccaggatgtaactgcccaccaggacctcctggtcccactggaaga
cctggactcccagggaacaaaggctccattggaatgcctgggcgtgtgggagtcaagggt
caaccaggcgagaagggtgcccctggtgatgccggcatgtccatcattggtccccgaggc
ccccctggccaaccaggcactcgaggcttccctgggtttccgggtcccattggcctggat
ggcaaaccgggccaccctggaccaaaaggggaaccgggcctggcgggaccccgaggactg
ccgggccctcaaggacagaaaggagaaaagggtcagtgtggcgagtatcctcatcggctg
ctgcctcttctcaattcagtgcgtctggctcctcccccagtcattaaaaggaggaccttc
cagggtgagcagggccaggctggtgtccaaggaccaccagggcccccaggcccccctgga
ccaactggacctctggggcacccaggactgccgggacccatggggccacccggcttacct
gggcctcctggacagaagggagacccagggatccaaggctaccatggccgcaagggggag
aggggcatgccaggaatgccaggcaaacatggagccaagggggcgcctgggatcgccgtg
gctgggatgaagggtgagccaggaactccaggagccaagggtgagaagggcgcttctggc
ccccctgggctctctgggctcctgggacagaagggagagaaaggtgatgctggcaactcc
attggaggaagcagaggggaacccggtcccccaggactccctgggcccccagggccaaag
ggagaagccggtgaggatggccacgctgggcccccaggacgtcaaggagacaaggggcag
ccaggagcagctggagagcagggaccagctggccccaagggctccaagggagaacctgga
aaaggagagatggtggactacaacggaaatatcaatgaggctcttcaggagatccgaaca
ctggccttgatggggccgcctggccttccaggacaaataggcccacccggagctccaggg
agtccaggccagaagggggagattggactacctggccctccgggacacgatggggaaaag
ggacctcgaggcaagccaggggatctgggtcctgcgggtccccaaggacccccaggaaag
gatgggcctccaggaatgaagggagaaaccggacacccagggaaccccggagagaaggga
gagaaaggggagatgggacacgcaggctcaccgggtctagacggcccaactggggagaaa
ggagaaccaggtgaccaagggaggcctggagctacaggattgcctggcccaattgggctc
ccgggatttacaggagagaaaggagaagctggagaaaagggcgatccaggagcagaggtt
cctgggccaccaggaccagagggacctcctggacctctgggcctccaaggtgttcctgga
ccaaagggggaagcaggcctagatggagcaaaaggagagaagggtgtccagggagaaaaa
ggagaccgagggcctctgggattaccgggagcttcaggtttggacggcaggcctgggcca
ccgggtactccaggaccagtcggagttccaggcccagcaggaccaaagggcgagaggggc
agcaaaggagatccagggatgacaggaccaacgggagcagctggacttcctggtttacat
ggaccacccggggacaaaggaaaccggggacatcgaggttttaaaggagagaaaggggag
ccggggttaccagggctggacggactggatgccccatgcccgttgggtgaagatggctta
ccagtccagggctgctggaacaagtga
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