Dipodomys spectabilis (banner-tailed kangaroo rat): 122122798
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Entry
122122798 CDS
T07891
Symbol
Upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03013
Nucleocytoplasmic transport
dsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122122798 (Upf3a)
03015 mRNA surveillance pathway
122122798 (Upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122122798 (Upf3a)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122122798 (Upf3a)
mRNA cycle factors
P-body specific factors
122122798 (Upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
122122798
NCBI-ProteinID:
XP_042553116
LinkDB
All DBs
Position
Unknown
AA seq
335 aa
AA seq
DB search
MRSEKERTGGLAATATARGPSGREKLLAAEAQLPRESPRREPETPPPSSSGCGSGAGKPR
EEKRTTLSKVVLRRLPPGLTKERLEELLRPLPAHDYFEVVAADVSLYPHLYSRAYINFRN
PDDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDTKTGSIEDDPDYKQF
LEMYSVEEEKTSANPETLLGEIEAKTRELFARRTTPLLEYIKNRKLEKQRIREEKREERR
RRELEKKRLREEEKRKRREEERYKRKEADKQKKTEKEVRIKLLKKPEKGEEPTTEKPKQK
GEEMCTGDEKQETYTPCTTLKVKPLENPPEVPREK
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggagaaggagcggactggtggcttggccgcgacagctaccgcgcggggtcca
agtggaagagagaagttgctggccgcggaggctcagttgccccgtgagtcgccgcggcgg
gagcctgaaacacctccgccctcgtcgtctggctgtgggagcggagccggcaaacctcgc
gaggagaagaggacgactttgagcaaggttgtcctccgtcggctgccccccggcctcacc
aaggagcgactggaggagctgctgcggccgctgccggcacacgattacttcgaggtggtc
gccgcggacgtcagtctttatcctcatctctactcaagagcatacattaattttagaaat
cctgatgacattcttctgttcagagaccgttttgatggatatatcttcattggcaataaa
ggcctggagtatcctgcagtggtggagtttgctcccttccagaagatagccaaaaagaag
ctgaagaagaaggataccaagactggaagtatcgaagacgatccagattataaacagttt
ttggaaatgtacagtgtggaggaagagaaaaccagtgccaatcctgagacacttctaggg
gagatagaggcaaagacaagagaactctttgctagaagaaccacacctcttttggaatat
attaagaatagaaaattagaaaagcagagaattcgagaagaaaagagagaagaacggagg
aggagggaattagaaaaaaaacgcttgcgggaggaagaaaaaagaaaaagaagggaagaa
gaaagatataaaagaaaagaagcagataagcaaaagaaaactgagaaagaagtaaggatt
aagcttcttaagaaaccagaaaagggagaggaaccaaccacagagaaaccaaaacaaaaa
ggtgaagaaatgtgtactggagatgaaaaacaggagacatataccccctgtacaaccttg
aaagtcaagcccctggagaacccaccagaagtgcccagggagaagtga
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