Dipodomys spectabilis (banner-tailed kangaroo rat): 122122886
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Entry
122122886 CDS
T07891
Symbol
Ptbp1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122122886 (Ptbp1)
03041 Spliceosome [BR:
dsp03041
]
122122886 (Ptbp1)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
122122886 (Ptbp1)
Spliceosome [BR:
dsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122122886 (Ptbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
122122886
NCBI-ProteinID:
XP_042553254
LinkDB
All DBs
Position
Unknown
AA seq
601 aa
AA seq
DB search
MDGIVPDIAVGTKVPGRPSCLPGSLVAQPQDLTPAWPPRLCPPRPWLPAAAWSCGPQRGS
DELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPGDVTEGEVI
SLGLPFGKVTNLLMLKGKNQAFIEMNTEESANTMVNYYTSVTPVLRGQPIYIQFSNHKEL
KTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVT
LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID
FSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGIISASPYAGAGFPPT
FAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVT
PQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK
HQSVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDL
KILFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST
I
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggacggcatcgtcccagacatagcagttggtacaaaggtgccagggagaccttcctgt
ctgccgggtagcctggtcgcccagccccaggacctcaccccagcttggcctccaaggctc
tgccctccaaggccctggctgcctgcagcagcctggtcctgcgggccccagcggggatct
gacgagcttttttctacgtgtgttaccaacggaccctttatcatgagcagcaactctgcc
tctgcagccaatggaaacgacagcaagaagttcaaaggggacaacaggagtgctggggtc
ccctccagagtgatccatgtccgaaagctgcctggggatgtcaccgagggtgaggtcatc
tccttggggctgcccttcgggaaggtcaccaacctcctcatgctgaaggggaagaaccag
gccttcattgagatgaacacggaggagtcagccaacaccatggttaactactatacttca
gtcactccggttctccgtggccagcccatctacatccagttttccaaccacaaggagctc
aagaccgatagctctcccaaccaagcgcgggctcaagctgccctgcaggctgtgaactca
gtccagtcaggaaacctggccctggccgcctctgctgcagctgttgatgcagggatggct
atggcagggcagagccctgtcctcaggatcattgtagagaacctcttctaccctgtgact
ctggacgtgctgcaccagatcttctccaaattcggcacagttctgaaaatcatcacattc
accaaaaacaaccagtttcaggcgctgctgcagtatgctgaccccgtgagtgcccaacat
gccaagctgtccctggatgggcagaacatctacaatgcctgctgcacactgagaatcgat
ttctccaagctcaccagcctcaatgtcaagtacaacaacgacaagagccgtgactataca
cgcccagacctgccctctggtgacagccagccctcgttggaccagaccatggctgcagcc
tttggtgcacctggtataatctcagcctctccgtatgcaggagctgggttccctcccacc
tttgccattccacaagctgcaggcctttctgtccctaacgtacatggagccctggcccca
ctggccataccatcagcagctgctgcagcagccgcagcaggccgcattgccatcccaggc
ctcgctggtgctgggaactcggtcctgctggtcagcaacctgaaccccgagagagtcaca
ccccaaagcctctttattcttttcggagtctatggtgatgtgcagcgggtgaagatcctg
ttcaataaaaaggagaacgcactggtgcagatggccgacggcagccaggctcagctggct
atgagccacctgaatgggcacaagctgcatgggaagcctgtccgcatcaccctgtccaag
caccagagcgtgcagctgccccgagagggccaggaggaccagggtctcaccaaggactac
ggcaactcaccactacaccggttcaagaagcctggctccaagaatttccagaacatcttc
ccaccctcagctaccctgcacctctccaacatcccgccctccatatctgaggaagacctc
aagatcctcttctccagcaatgggggcgtcgtcaaggggttcaagttcttccagaaggac
cgcaagatggcactgatccaaatgggctctgtggaggaggcagtgcaggccctcatagac
ctgcacaaccatgacctgggagagaaccaccaccttcgagtgtccttctccaagtccacc
atctag
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