Dipodomys spectabilis (banner-tailed kangaroo rat): 122123871
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Entry
122123871 CDS
T07891
Symbol
Parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122123871 (Parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122123871 (Parn)
Enzymes [BR:
dsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122123871 (Parn)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122123871 (Parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
NCBP3
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
122123871
NCBI-ProteinID:
XP_042554340
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTTLTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGSGALAYASPNTSQCPVTVPEDQKKF
IEQVVAKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
VSKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIASSGKLVVGHNMLLDVMHTVHQF
YCPLPPDLNEFKEMTTCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYNTASEQLHEAGYDAYITGLCFISMADYLGSFLDPPKIHVSARSKLIEPFFN
KLFLMRILDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIHISWIDDTS
AFVSLSQPDLVKIAVNTSKYAESYRIQTYAEYVGKKREEKQTKRKWTEDSWQEVERKRLD
TKTLSHELQNHDFCTNSFSATSTVGERNVSPGAREAGSEDGVAGEESECEAEPLSEGRKK
AKKLKRMKKELPRAGSCTDSPAKLFEVPDTW
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggagataatccgaagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggcggacttcttcgctatcgatggggagttctcaggtatcagtgatggaccctcagtg
accacattaactaatggttttgacactccagaagagagatatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgaccacacagat
tcaaagtatataacaaagtcatttaacttctacgttttccccaagcccttcagtagatcc
tcaccagatgtcaaatttgtctgtcagagctccagcattgacttcctagcgagccaagga
tttgattttaataaagtttttcgcaatggaattccatatttaaatcaggaagaagaaaga
cagctgagagagcaatatgatgaaaagcgttctcaggctaatgggtcaggagcactggcc
tatgcatctcccaacacttcacagtgtcctgtgacagttcctgaagatcagaagaagttt
attgagcaagttgtagcgaaaatagaagacttactgcaaagtgaagagaacaagaatttg
gatttagagccatgtaccgggttccaaagaaagttaatttatcaaactttgagctggaag
tatcccaaaggcattcatgttgagactttagaaaccgaaaagaaggagcgatacatagtt
gtcagcaaagtagatgaggaagaacgcaagagaagggagcagcagaaacatgctaaagaa
caggaggagctgaatgatgctgtgggattctcaagagtcattcatgccatcgctagttct
gggaagcttgttgtaggacacaatatgctcctggatgtcatgcacacggtccaccagttc
tactgccctctgcctccggacttgaatgagtttaaggagatgacgacatgtgtcttccca
aggctcttggatactaaattgatggccagcacacagccttttaaggaaatcattaacaac
acatcccttgcagaactggaaaagcgattaaaagagacacctttcaatcctcctaaagtt
gaaagtgcagaaggttttccaagttacaacacagcttccgagcagctccacgaggccggc
tacgatgcttatatcaccggactgtgcttcatctccatggctgattacctgggttctttt
cttgatccaccaaaaattcatgtgtctgccagatcaaaactcatcgagcctttttttaac
aagctatttcttatgaggatcctggacatcccctatctaaacctggaaggaccagacttg
cagcctaaacgtgaccatgttctccatgtgacattccctaaggagtggaaaaccagcgac
ctttaccagctcttcagtgcctttggtaacattcacatatcctggattgatgacacatcg
gccttcgtttctctcagccaacctgacctagttaagattgctgtgaataccagcaaatac
gcagaaagctatcggatccagacctatgccgagtatgtggggaagaaacgggaagagaag
cagaccaagagaaaatggacagaggacagttggcaggaggtggaacggaagaggctggac
acaaaaaccttatctcacgagttacagaaccatgacttctgtaccaacagcttctcggcc
accagcaccgtgggagagaggaacgtcagccctggggcaagagaagctggctcggaggac
ggagtggctggggaggaatctgagtgcgaggctgagcccctctccgagggacgcaagaag
gccaagaaattgaaaaggatgaagaaagagcttcctcgggcagggagctgcacggacagc
ccggccaagctcttcgaggttccggacacctggtaa
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