Dipodomys spectabilis (banner-tailed kangaroo rat): 122123888
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Entry
122123888 CDS
T07891
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04612
Antigen processing and presentation
dsp05145
Toxoplasmosis
dsp05152
Tuberculosis
dsp05164
Influenza A
dsp05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
122123888 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
122123888 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
122123888 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
122123888 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
122123888 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
dsp01001
]
122123888 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
dsp04054
]
122123888 (Ciita)
Enzymes [BR:
dsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
122123888 (Ciita)
Protein kinases [BR:
dsp01001
]
Serine/threonine kinases: Other
TAF1 family
122123888 (Ciita)
Pattern recognition receptors [BR:
dsp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122123888 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_9
AAA_16
LRR_14
AAA_22
Motif
Other DBs
NCBI-GeneID:
122123888
NCBI-ProteinID:
XP_042554369
LinkDB
All DBs
Position
Unknown
AA seq
1205 aa
AA seq
DB search
MNHFQAILPQVRNLLSGQQHRQVQALLDSLLGAELLSREYHSALLRERDGEALARKISLS
LLDKGDLDGALWGRTWSRLQAVASDGGPGHQHPKGSGQPGTMEVGLPEGGYLELLNSDTD
PLCLYHICDQMDLAGEEIELCSEADPETINCDQFTRLLCDVEEDEEAGEAYANIAELDQY
VFQDSQMEGLSKDIFIEHIGLDEGTCESIEVPAEAGKRNQKRALPEEQPLDPKRRKPAET
PAVPILTGSFLVGPVGSNSPLLCPSPALFSQEPVPGQAHLEGAVQLTALPSGSSMNCLHL
SAGPFQFISTLPALPQGCWQISEAGTNISGIFIYHGDIPQASQVFPGTGPPVQSLPKSPE
RPGSTSPFAPSTADLPSMPEAALTSRAGVTEDDMSPSPHQGAAEVSVSLPKWPGPVEQFC
RSLRDRYRAEPAGLDGLLVDVDLVRARLEKGSNKSQERELATLDWAERQPARGGLAEVLL
STSDRRQPRETHVIAVLGKAGVGKSHWARAVSRAWACGQLPQYDFVFHVPCHCLDRPGTT
YRLQDLLCPAGLHAQALDDRILSHIVRRSNHVLLILDGFEELEAQDGSCGPVCSEPCSFR
GLLAGLFQGKLLRGCTLVLTARPRGRLAQCLSKADALFEVPGFSAEQALTYLRRYFEDTG
ATEDQERALALLREQPFLSSHGHNPAVCQAVCQLSKVLLRAGAEAQLPCTLTGLYVGLVG
PAARDSPPGALASLAELAWELGRRHQSTLREDQFPSAEVRTWAVARGLVRAAPGAVEAGL
AFASFPLHCFLGALWLAQSSDIKDKKLPQYLALTPRKKRPYDNWLAGAPRFLVGLLFQPR
ARCLGALLGPAAAAAGADRKRKVLTRYLKRLQPGKLQAARVLELLHCAHEAQDPGIWQHV
LQGLPENLSFLGTRLTPPDAHLLGRALESAGRDFSLDLRSTGLDPSGLGSLVGLSCVTRF
RAALSDTTGLWESLRRRGETPLLCAAEEKFTIEPFKAKSLKDVEDLGHLVQTPRVTRCSD
DPARDLPAVRDLKKLEFALGPVLGAQAFPKLARILPAFSSLQHLDLDSLSENKIGDEGVA
QLSATFPWLKALETLNLSQNSITDVGACQLADALPALAATLLRLSLYNNCICDKGAESLA
RVLPDMESLRVMDVQYNKFTAVGAQQLAASLRKCPHLHTLAMWTPTIPFGVQEHLQQLDS
RISLR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacttccaggctatcctgccccaagtccggaatcttctgtccggccagcagcac
aggcaggtgcaggccctgctggacagcctgctgggggcggagctcctgtcccgggagtac
cacagcgccctgctccgggagcgcgatggggaggcgctggccaggaagatctccctgagc
ctgctggacaagggagacctggacggggccctgtggggccgcacctggagcaggctgcag
gctgtggcatccgacgggggcccaggccaccagcatcctaaaggcagtgggcagccaggc
accatggaggtgggcctgccagagggcgggtacctggagcttctcaacagtgacacagac
cccttatgcctttaccacatctgtgaccagatggacttagctggagaagagatcgagctg
tgctcagaagccgatccggaaaccatcaactgcgaccagttcactaggctgctgtgtgat
gtagaagaggatgaagaggctggggaggcttacgccaacattgcggaactggaccagtat
gtgttccaggactcccagatggaaggcctgagcaaggacattttcatagaacacattgga
ctagacgaggggacatgtgagagcatagaggtgccggccgaagcgggaaagcgaaatcag
aaaagagccctcccggaggagcagcccctggacccgaagcgcaggaagccagctgagaca
cctgctgtgcccatcctgactggcagtttcctggtagggccagtaggtagcaactctccc
ctgctctgcccatcacctgctctgttcagccaggaaccagtaccaggccaggcgcacctg
gagggagctgtccaactgacagcgctcccctctggatcctccatgaactgcctccatctt
tctgctggacctttccagttcatctcaactctccctgccctgccccaggggtgctggcaa
atttcagaggctggcacaaacatctccgggatatttatctatcatggtgacataccccag
gccagccaggtatttcctggcactggtcctcctgttcagagcctcccaaagtccccagag
cggccgggctccaccagcccctttgctccatccacggccgacctgcccagcatgcccgaa
gcagcgctgacctcccgtgcaggtgtgacagaggatgacatgtcaccctccccacaccaa
ggggctgcagaggtctctgtcagtctcccaaaatggcccgggcccgtggagcagttctgc
cgctctctccgggacaggtaccgggctgagcctgcgggcctggatggcctcctggtggac
gtggacctggtgcgggccaggctggagaagggcagcaacaagagccaggagagggagctg
gctaccctggactgggcagagcgacagccggcccgcgggggtctggccgaggtgctgctg
tccaccagtgaccgccgacagccgcgagaaacgcacgtgatcgccgtgctgggcaaagcc
ggcgtggggaagagccactgggcccgagcagtgagcagggcctgggcgtgcggccagctc
ccccagtacgacttcgtcttccacgtcccctgccattgcctggaccgtccggggaccacc
taccgcctgcaggatctgctctgccccgcgggcctgcacgcacaagccctggacgacagg
atcctcagccatattgtgaggcggtccaaccatgtcctgctcatcctggatggcttcgag
gagctcgaagcccaggacggctcgtgtggacccgtgtgctccgagccctgctccttccgc
gggctgctggccggcctgttccaggggaagctgctgcgaggctgcacgctggtcctcacc
gcccggccccggggccgcctggcccagtgcctgagcaaggccgacgccctgttcgaggtg
cccggcttctccgccgagcaggctctcacttacctaaggcgctactttgaggacacgggg
gccaccgaggaccaggagagggccctggcgctcctgagggaacagccatttctctccagc
cacgggcacaaccccgccgtgtgccaagccgtgtgccagctctccaaagtgctgctgcgg
gcgggcgccgaggcccagctgccctgcacgctcacgggactctacgtgggcctggtgggc
cccgccgccagggacagccccccgggggccctggccagcctggccgagctggcctgggag
ctgggccgcaggcaccagagcaccctgcgggaagaccagttcccctcggccgaggtcagg
acgtgggccgtggcccggggcttggtgcgggccgccccgggcgctgtggaggccgggctg
gcctttgccagcttcccgctgcactgcttcctgggggccctgtggctggcccagagcagc
gacatcaaggacaagaagctgccgcagtacctggcgctgacacccaggaagaagagaccc
tatgacaactggctggccggcgccccgcgcttcctcgtgggcctcctcttccagcctcgc
gcccgctgcctgggagccctgctggggcccgccgccgccgccgccggggcggacaggaag
cggaaggtgctcacgaggtacctgaagcggctccagcccgggaagctgcaggcggcgcgg
gtgctggagctgctgcactgcgcccacgaggcacaggaccccgggatctggcagcacgtg
ctgcaggggctccccgaaaacctctccttcctgggcacccggctcacgccccccgatgcc
cacctgctgggcagggccttggagtcggcaggccgagacttctccctggacctccgcagc
actggccttgacccctcgggcctgggcagcctcgtgggactctcctgtgtcacacgtttc
agggccgccttgagtgataccaccgggctgtgggagtcgctgcggcggcgtggggagacc
ccgctactctgtgcggcggaggagaaattcaccatcgagcccttcaaggccaagtccctg
aaggacgtcgaggacctgggccacctggtgcagaccccgagggtgacacgttgctccgac
gacccggccagggacctgcctgccgtccgagacttgaagaagctggagtttgcattgggc
cctgtcctgggtgcccaggccttcccgaagctggcgaggatccttcccgccttctcttcc
cttcagcatctggacctggactccctgagcgagaacaagatcggggacgagggtgtcgcg
cagctctcggccaccttcccatggctgaaggcgctggagacgctcaacctctcccagaac
agcatcaccgacgtgggcgcctgccagctggcggacgccctgcccgcccttgccgccacc
ctcctgaggctcagcttgtacaataactgcatctgtgacaaaggtgccgagagcctggca
cgcgtgctccccgacatggagtccctgcgggtgatggatgtccagtacaacaagttcacg
gctgtgggtgcccagcagctggccgccagcctgaggaagtgcccccacctgcacacgctg
gccatgtggacacctaccattccctttggcgtccaggaacatttgcagcaactggactcg
cggatcagcctgagatga
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