Dipodomys spectabilis (banner-tailed kangaroo rat): 122123988
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Entry
122123988 CDS
T07891
Symbol
Abca1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp02010
ABC transporters
dsp04148
Efferocytosis
dsp04975
Fat digestion and absorption
dsp04979
Cholesterol metabolism
dsp05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
122123988 (Abca1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122123988 (Abca1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
122123988 (Abca1)
04979 Cholesterol metabolism
122123988 (Abca1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
122123988 (Abca1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dsp02000
]
122123988 (Abca1)
Transporters [BR:
dsp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
122123988 (Abca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
122123988
NCBI-ProteinID:
XP_042554499
LinkDB
All DBs
Position
Unknown
AA seq
2263 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFDKSIVSRLFSDARKFLLFSQKDT
SMKDIHRVLRTLHQIKNSGPSLKLQDFLVDNEAFSGFLYHNLSLPRPTVHRLLQANVSLH
KVFLQGYQLHLTNLCNGSKLGDTIQISEPEVSELCGQPREKLDVAEQVLRSNRDILKPIV
IGLNSTSSFPIQQLVEATRTLLDSLGSLAQELFSMRSWSDMRQEVMFLTNVNSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEEDADSFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWEELS
PKIWTFMESSQEMDLVRMLLESKSNDQFWEQQLDGLDWTAQDIIAFLAKHPEDIQSSNGS
VYTWREAFNETNQAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTG
VSPGSTELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVIILKLGNLLPYSDPSVVFV
FLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFAVKIFVS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEGDGFNLTTAVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEQSDEKSHPGSNQKGISEICMEEEPTHLKLGVS
IQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSELSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYLKKVVPELPPAGQSGGRGGEVQRLVALTQDVSAISNLIRKHVSEARLVE
DIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVD
AETSDGTLPARRNRRVFGDKQSCLRPFTEDDAIDPNDSDIDPESRETDLLSGMDGKGSYQ
VKGWKLTQQQFLALLWKRLLIAKRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLE
LQPWMYNEQYTFVSNDAPEDMGTQELLNALTKDPGFGTRCMEGNPIPDTPCLVGEEEWTT
AAVPQTIVDLFQNGNWTMENPSPACQCSSEKIKKMLPVCPPGAGGLPPPQRKQNTADILQ
NLTGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNSQALPPSQEVKDAIKQV
KKHLRLAKDSSADRFLSSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANL
QKGENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQ
ERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVL
ALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNN
INDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGEDRFVSPLSWDLVGRNLFAMAV
EGVVFFLITVLIQYRFFIRPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELT
KIYRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSIL
SSIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYG
EKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVV
LTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGANPDLKPVQEF
FGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFV
NFAKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEEVKESYV
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggcctcagttgaggttgctgctgtggaagaacctgactttcagaagaaga
caaacatgtcagctgctgctggaagtggcctggcctttgttcatcttcttcatcttgatc
tctgtccggctgagctatccaccctatgaacaacatgaatgccactttccaaataaagcc
atgccatcggcaggaacgcttccttgggttcaggggattatctgtaatgccaacaatccc
tgtttccgttacccaacacctggggaggctcctggggttgttggaaactttgacaaatcc
attgtatctcgcctgttctcagatgctcggaagtttcttttattcagccagaaagacacc
agcatgaaggacatacacagagttctgagaacattgcatcagatcaagaattctggccca
agcttgaagcttcaggatttcctggtggataatgaagccttctctggatttctgtatcac
aatctctctctcccaaggccaactgtgcacagattgctgcaggctaatgtcagtctgcac
aaggtatttttgcaaggttaccagttgcatttgaccaatctgtgcaatggatcaaaatta
ggagataccattcaaatcagtgagccggaagtttctgagctttgtgggcaacccagagag
aagctggatgtggcagagcaggtgcttcgttccaacagggacattctgaagccgattgtg
ataggactaaactccacgtcttccttcccaattcagcagctggtggaagctactagaact
ttactggatagtcttggaagtctggcccaagagctgttcagcatgaggagctggagtgac
atgcggcaggaggtgatgtttctaaccaatgtgaacagcagcagctcctccacgcagata
taccaggctgtgtcccgtatcgtctgtggccatccagagggcgggggactgaagataaag
tctcttaactggtatgaggacaacaactacaaagccctctttggaggcaatggcacagaa
gaagatgctgacagcttctatgacaactctacaactccttactgcaatgatctgatgaag
aatttggagtctagtcctctttctcgcattatttggaaagctctcaagcctctgcttgtt
ggaaagattctgtatacacctgacactccagccacgagacaagttatggctgaggtgaac
aagaccttccaggaactggctgtctttcatgatctggaaggcatgtgggaagaactcagt
cctaagatttggaccttcatggagagtagccaagaaatggaccttgtgcggatgctgttg
gaaagcaaaagcaatgaccagttttgggaacagcaattagatggcttagattggacagcc
caagacatcattgcatttctggctaaacacccagaggatattcagtcctctaatggctcc
gtatatacctggagagaggctttcaatgagaccaaccaggcaatccagacaatatctcgc
ttcatggagtgtgtcaacctgaacaagctggaacccataccaactgaagtccgactcatc
aacaagtccatggagctgctggatgagaggaagttctgggctggtattgtgttcacgggt
gtcagtccaggcagcactgaactgccccatcatgtcaagtacaagatccgaatggacatt
gacaatgtggaaaggaccaataaaatcaaggatgggtattgggaccctggtcctcgggct
gacccatttgaggacatgcggtatgtctggggaggctttgcctatctgcaggatgtggtg
gagcaggcaatcataagggtgttgactggtactgagaagaaaacaggtgtctatatgcaa
cagatgccctacccctgttacgttgatgacatcttcctacgggtgatgagccggtcgatg
cccctcttcatgacactggcctggatttactctgtggctgttatcatcaagggcatcgtg
tatgagaaggaggcgcggctgaaggagaccatgcggatcatgggcctggataatggcatc
ctctggtttagctggttcatcagtagtctcatccctctacttgtgagtgccggcctactg
gttatcatcttgaagttaggaaacctgctgccctacagcgaccccagtgtggtgtttgtc
ttcctgtctgtgtttgcggtggtgaccatcctgcagtgcttcctgattagcacactcttc
tcccgggccaacctggcggcagcctgtgggggcatcatctacttcacgctgtacctgccc
tacgtcctgtgtgtggcatggcaggactatgtgggctttgcagtcaagatttttgtgagc
ctgctgtctcctgtggcttttgggtttggctgtgagtactttgcgctttttgaggaacaa
ggcatcggtgtgcagtgggacaacctctttgagagtcctgtggagggagatggcttcaat
ctcaccactgctgtctccatgatgttgtttgacaccttcctctatggagtgatgacgtgg
tacatcgaggctgtcttcccaggtcagtatggaattcccaggccctggtattttccttgt
accaagtcttactggtttggtgaacaaagtgatgagaagagccaccctggttccaatcag
aaaggaatatcagaaatctgcatggaagaagaacccacgcatctgaagctgggtgtgtcc
attcagaacctggtgaaggtttaccgagatggcatgaaggtggctgtggatggcctggca
ctgaatttttatgagggacagatcacctccttcctgggccacaatggagcagggaagaca
accaccatgtccatcctgactgggttgttccctcccacctcgggcactgcttacatcctg
gggaaggacattcgctccgagttgagcaccattcggcagaacctcggggtctgtccccag
cataatgtcctgtttgacatgttgacggtggaagagcacatctggttctacgcccgcctg
aaggggctctcagagaaacacgtgaaagcagagatggagcagatggccctggatgttggt
ttgccacccagcaagctgaaaagcaaaacaagtcagctgtcaggtgggatgcaaagaaag
ctgtctgttgccctggccttcgtgggaggatccaaggttgttattctggatgagcccaca
gctggtgtggacccttactctcgcaggggaatatgggagctactgttgaaatatcgccaa
ggccgtaccatcattctctctacacatcacatggatgaagcagacgtcttgggagacagg
attgccatcatctcccatgggaagctgtgttgtgtgggctcttccttgttcctgaaaaac
cagctgggaacaggctactatctgactctggtcaagaaagatgtggaatcttctctcagt
tcctgcaggaatagcagcagcactgtgtcatacctgaaaaaggtggtgcctgagcttccc
ccagctgggcagagtggaggcagaggaggcgaggtgcagaggctggtggcgctgactcaa
gatgtgtctgcaatctccaacctcatcaggaagcatgtatctgaagcccggctggtagaa
gacattggacatgagttgacctatgtgctgccatatgaagcagctaaggagggagccttt
gtggaacttttccatgagattgatgaccggctctcagacttgggcatctccagttatggc
atctcagagactaccctagaagaaatattccttaaagtggcagaagagagtggagtggat
gcggagacttcagatggaaccttgccagcaagacggaacaggcgggtctttggggacaag
cagagctgtctgcgcccattcactgaagatgatgctattgatccgaatgactctgacatc
gacccagaatccagagagactgacctgctcagtggaatggatggcaaaggctcctaccag
gtgaagggctggaaactgacacagcaacagtttttagctcttttatggaagaggctgctg
attgccaaaaggagtaggaaaggattttttgctcagattgtcctgccagctgtgtttgtc
tgcattgctctggtgttcagcctgatcgtaccaccctttggcaagtaccccagcctggaa
cttcagccttggatgtacaatgagcagtatacatttgtcagtaatgatgctcctgaagat
atgggaacccaggagctcttgaatgccctcaccaaggaccctggcttcggaacccgttgt
atggaaggaaacccaatcccagacacaccctgcttggtgggggaggaggaatggaccact
gctgctgttcctcagaccattgtcgatctcttccaaaatgggaactggacgatggagaac
ccttctcctgcctgccagtgtagcagtgaaaaaataaagaagatgctgcctgtgtgtcct
ccaggggctggagggctgccccctccacaaagaaaacagaacactgcagacatccttcag
aacctgacaggaagaaacatttcagattacttggtgaagacatacgttcagatcattgct
aaaagcttaaagaataagatctgggtgaatgagtttaggtatggagggttttccctgggt
gtcagtaattctcaagcacttcctccaagtcaagaagttaaggatgccatcaagcaagta
aagaaacacttgaggctggccaaagacagttctgcagatcgatttctcagcagcttggga
aggttcatgacaggtctggataccaaaaacaatgtcaaggtgtggttcaataacaagggc
tggcatgccatcagctctttcctgaatgtcatcaacaatgctattctccgggctaacctg
cagaagggagagaatcctagccagtatggaatcactgctttcaatcaccccctgaatctc
accaaacagcagctctcagaggtggctttgatgaccacatcggtggatgtccttgtgtcc
atctgtgtcatctttgcgatgtcttttgtcccagccagctttgttgtgttcctaattcag
gaacgggtcagcaaagcaaagcatctgcagttcatcagtggggtgaagcctgtcatttac
tggctctccaattttgtctgggatatgtgcaattatgtggtccctgctacactggtcatt
atcatcttcatctgcttccaacagaagtcctatgtgtcctccaccaacctgcctgtgtta
gcccttctacttttgttatatgggtggtccatcacacctctcatgtacccagcttccttt
gtgttcaagatccccagcacagcctatgtagtactcaccagtgtgaatctcttcatcggc
atcaatggcagtgtggccacttttgtgctggagctcttcaccaacaacaagctgaataac
atcaatgacatcttgaagtctgtgttcctgatcttcccccacttctgcctggggagaggg
ctcattgacatggtgaaaaatcaggcaatggctgatgctctggaaagatttggagaagat
cgctttgtgtcaccactttcttgggatttggtggggcggaacctttttgccatggcagtg
gaaggagtggtgtttttcctcattactgttctgatccagtacagattcttcatcaggccc
agacctgtgaaggcaaagctccctcctctgaatgatgaggatgaagatgtaaggcgggaa
agacagagaatcctggatggtggaggacagaatgacattttggaaatcaaggaactgact
aagatatacagaaggaagaggaagccagctgttgataggatttgtgttggcattcctcct
ggagagtgctttggactcctgggagtgaatggtgctgggaaatcatcaactttcaagatg
ttaactggagacaccactgtaaccagaggtgatgcttttcttaacaaaaacagcatctta
tcaagtatccacgaagtacatcagaacatgggctactgccctcagttcgatgccatcaca
gagcttctgactgggagagaacacgtggagttctttgctctcttgagaggagtcccagag
aaagaagttggcaaggttggtgagtgggcaattcggaaactgggcctcgtgaagtatggg
gagaagtacgctggcaactacagtggaggcaacaagaggaaactttctacagccatggct
ttgattggcgggcccccggtggtgtttctggatgagccaactacaggcatggatcccaaa
gcccgaagattcttatggaattgtgccctcagcatcgtcaaagaggggagatcggtggtg
ctgacctctcacagcatggaagaatgtgaagctctttgcactaggatggcaattatggtc
aatgggaggttcaggtgcctcggcagtgtccaacatctgaaaaatagatttggagatggt
tatactatagttgtacgaatagcaggggccaaccctgacctgaagcctgtccaggaattc
ttcggactcgcctttccaggaagtgtcctaaaggagaaacaccggaacatgctccagtac
cagcttccatcctcattatcttctctggctaggatattcagtatcctctcccagagcaaa
aagcgactccacatagaagactactctgtttcccagacaacacttgaccaagtattcgtg
aactttgccaaggaccaaagtgatgacgaccacttaaaggacctatcattgcacaaaaac
cagacagtggtggatgtggcagtgctcacgtctttcctgcaggatgaggaagtgaaagaa
agttatgtatga
DBGET
integrated database retrieval system
