Dipodomys spectabilis (banner-tailed kangaroo rat): 122124397
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Entry
122124397 CDS
T07891
Symbol
Cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03015
mRNA surveillance pathway
dsp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122124397 (Cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122124397 (Cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122124397 (Cpsf6)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
122124397 (Cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
122124397
NCBI-ProteinID:
XP_042555079
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVK
GTRPLFLETRIPWHMGHSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPL
AGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF
PPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDP
YGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGS
AIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRS
REKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatagacatttacgcggatgtaggcgaagagttcaaccag
gaagcagaatacggtgggcatgatcagatagatttgtatgatgatgtcatctctccatcg
gcaaataatggagatgccccagaagatcgtgattacatggataccctcccaccaactgtt
ggtgatgatgtgggcaaaggagcagctccaaatgtcgtctatacttataccggaaagaga
attgcgttatatattggaaatctaacatggtggacaaccgatgaagacttaacggaagca
gttcattccttgggagtaaatgatatcttggagataaaattttttgaaaatcgagcaaat
ggccagtcaaagggatttgcccttgttggtgttgggtctgaagcatcttcaaaaaagtta
atggatctgttacctaaaagagaacttcatggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcagtccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccaggaggcagttcacgtgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcctggtggggacagatttcctgggcca
gcaggaccaggagggccacccccaccttttccaggaaatttgatcaagcatcttgttaaa
ggaactcggcctttgttcctggaaactaggattccatggcatatggggcacagcatagag
gaaatacccatttttggcctaaaagctggacaaactccaccacggccacccttaggtcca
ccaggccctcctggccctccaggtcctccacctcctggtcaggttctgccgcctcctcta
gctgggcctcctaatcgaggagatcgccctccaccaccagttctttttcctggacaacct
ttcgggcagcctccgctgggtccacttcctcctgggcctccacctccagttccaggctac
ggccctcctcctggtcctccacctccacagcagggaccacctccacctcctggtcctttc
ccacctcgcccccctggtccacttgggccaccccttacacttgctccccctccgcatctt
ccgggaccacctccaggtgccccaccaccagctccacatgtgaatccggcattttttcct
ccaccaactaatagtggcatgcctacatcagatagccgaggtccaccgccaacagatcca
tatggtcgacctccaccatatgacaggggtgattatgggccccctggaagggaaatggat
actgcaagaacaccattgagtgaagctgagtttgaagaaatcatgaatagaaatagggca
atctcaagtagtgctatttcaagagctgtttctgatgccagtgctggtgactatgggagt
gctattgagacattggtaacagccatttctttaattaaacaatccaaagtatctgctgat
gatcgttgcaaagttcttatcagctctttgcaagattgccttcatggaattgaatccaag
tcatatggatctggatcaagaagacgtgaacgatcaagagaaagggaccatagtagatca
cgagaaaagagtcggcgtcataaatcccgtagtagagatcgccatgatgattattataga
gagagaagcagagaacgagagagacaccgagaccgtgaccgagaccgtgaccgagaacgg
gaccgagagcgagagtatcgtcatcgttag
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