Dipodomys spectabilis (banner-tailed kangaroo rat): 122124644
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Entry
122124644 CDS
T07891
Symbol
Smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03082
ATP-dependent chromatin remodeling
dsp04714
Thermogenesis
dsp05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122124644 (Smarca2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
122124644 (Smarca2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
122124644 (Smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsp03021
]
122124644 (Smarca2)
03036 Chromosome and associated proteins [BR:
dsp03036
]
122124644 (Smarca2)
Transcription machinery [BR:
dsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122124644 (Smarca2)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122124644 (Smarca2)
Chromatin remodeling factors
BAF complex
122124644 (Smarca2)
PBAF complex
122124644 (Smarca2)
GBAF(ncBAF) complex
122124644 (Smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
122124644
NCBI-ProteinID:
XP_042555250
LinkDB
All DBs
Position
Unknown
AA seq
1591 aa
AA seq
DB search
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPAM
GSADFPQEGIHQLHKPIDGMHDKGMVEDIHCGTMKGTGMRPPHPAMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPLSGGGPTPPQMPPSQPGPLIPGDLQAMNQTNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQPQQQQQQQQQQQQQQQPQ
PQQAPQAQPSQQPPALVSYNRPSGSGPELLSGLSTPQKLPVPAPSGRPSPVPPATAQPPA
AAVPGPSVQQPGPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQ
ELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSK
RQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKA
VATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVAN
LTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTH
TETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESGSDYEEEDEEEESSRQETEEK
IVLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALL
INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII
VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHI
LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLL
PTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP
EKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHP
YMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLM
TIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAAD
TVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI
QAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMD
RRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDA
LTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRGRPPAEKLSPN
PPKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEY
YELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVF
KSARQKIAKEEESEDESNEEEEEEEEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPN
RGKAKPVVSDFDSDEEQDENEQSEASGTDDE
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcctacagacccagctgccatgccccaccctggcccctcaccaggacccggc
ccttcccctggaccaattctgggacctagcccaggaccaggaccatccccaggttctgtc
cacagcatgatgggcccaagtcctgggcctcccagtgtctcacatcccatgccggcaatg
ggctccgcagacttcccacaagaaggcatccatcagctgcataagcccatcgatgggatg
cacgacaaagggatggtggaagatatccactgtggaaccatgaagggcactggcatgcga
ccacctcaccccgcaatgggtcctccacagagtccaatggatcaacacagccaaggttat
atgtccccacatccatctccacttggagccccagagcatgtctccagccctctctctgga
ggaggcccaactccaccccagatgccaccgagccagccagggcctctcatccctggtgat
ctgcaggcgatgaaccagaccaacagaggcccctcgcctttcagccctgtccagctgcat
cagcttcgagctcagattttagcttacaaaatgttagcccgtggccagcccctccctgaa
acactgcagcttgcagtccaggggaaaaggacgttgcctggcatgcagcagcaacagcag
cagcaaccacagcagcagcagcagcagcagcagcagcagcagcagcagcagcagccacag
ccacaacaggcaccccaggcacagccatcgcagcagccaccggcccttgttagctacaat
agaccatctggctccgggcctgagctgttgagtggcctcagcaccccccagaaactgccg
gtgccagcgcccagtggccgcccttcacctgtacctccagccactgcccagccacctgcg
gctgccgtgcctgggccctctgtgcagcagcccggcccggggcagccctcgcctgtcctg
cagctgcaacagaagcagagccgcatcagccccatccagaaaccacaaggcctggacccc
gtggagatcctacaggaacgggagtacagactgcaggctcgcatagctcataggatacaa
gaactggaaaatctacctggctctttgccaccagatttacgaaccaaagcaaccgtggaa
ctgaaagcccttcggttactcaatttccagcgtcagctgagacaggaggtggtagcctgc
atgcgtagggatactaccctggagacagctctcaactctaaagcttacaaacggagcaag
cgccagactctgagagaagcccgcatgaccgagaagctggaaaagcagcagaagattgag
caggagagaaagcgccggcaaaaacaccaggaatatctgaacagtatcttgcaacatgca
aaagattttaaggaataccatcgctctgtggccggcaagatccagaagctttccaaagca
gtggcaacttggcatgccaacaccgagagggagcagaagaaggagacagagcggattgaa
aaggagagaatgcggagattgatggctgaagatgaagagggctataggaaactcattgac
caaaagaaagacaggcgtttagcttaccttttgcagcagactgatgagtatgtggccaat
ctaaccaacctggtttgggagcacaagcaggcccaagcagccaaagagaagaagaagaga
aggaggaggaagaagaaggctgaggagaatgcagagggaggggagtctgccctgggacca
gatggagagccgatagatgagagcagtcagatgagcgacctgcctgtcaaagtgacccac
acagaaactggcaaggtcctatttggaccagaagcacccaaagccagtcagctggacgcc
tggttggaaatgaatcctggttatgaagttgcccctagatccgacagtgaagaaagcggc
tctgattatgaagaggaggatgaggaagaagagtccagtagacaggaaaccgaagaaaaa
atagttctggatccaaacagtgaagaagtttctgagaaggatgctaagcagatcattgaa
acagcgaagcaagatgtggatgatgaatacagcatgcagtacagcgccagaggatcccag
tcctactacaccgtggcccatgccatctcagagcgggtggagaagcagtctgccctcctc
attaatgggaccctaaagcattatcagctccagggcctggaatggatggtttccctgtat
aataacaatttgaacggaatcctagctgatgagatggggctaggcaagaccatacagacc
atcgcactcatcacttacctgatggagcacaaaagactcaatggtccctatctcatcatc
gttcccctctcgactctatctaactggacatatgaatttgacaagtgggctccttctgtg
gtgaaaatttcttacaagggtacccctgccatgcgccgttccctggtcccccaactacga
agtggcaaattcaatgtccttctcactacttatgagtacattataaaagacaagcacatt
cttgcaaagattcggtggaaatatatgatagtggatgaaggccaccgaatgaagaaccat
cactgcaagctgactcaggtgttaaacacccactacgtggcccctagaaggatcctcttg
actgggacgccattgcaaaacaagctccctgaactctgggccctcctcaacttcctcctc
cctacaatttttaagagctgcagcacatttgaacagtggtttaatgctccatttgccatg
actggtgaaagggtggacttaaatgaagaagaaactatcctgatcatcagacgtctgcat
aaggtcctgagaccatttttactgaggagactgaagaaagaagttgaatcgcagcttcca
gaaaaagttgaatatgtgatcaagtgtgacatgtcagctctgcagaagattttgtatcgt
catatgcaagccaagggaatcctcctcacagatggttctgagaaagacaagaaggggaaa
ggaggcgcgaagacacttatgaacactatcatgcagttgagaaaaatctgcaatcaccca
tacatgttccagcacattgaggagtcctttgctgagcacctaggctattcaaatggggtc
atcaatggggctgagctgtatcgggcctcgggaaagtttgagctacttgaccgcattcta
ccaaagttgagagcgactaaccaccgcgtgctgcttttctgccagatgacgtccctcatg
accatcatggaggactactttgcttttcggaacttcctttacctgcgcctagatggcacc
accaagtctgaagatcgtgctgctttgctgaagaaattcaatgaacccgggtcccagtat
ttcattttcttgctgagcacacgagctggaggcctgggcttaaatcttcaagcagctgac
acggtggtcatctttgacagcgactggaatcctcatcaggatctgcaagcacaagaccga
gctcaccgcattggtcaacagaacgaggtccgggtgctgcgactctgcaccgtcaacagt
gtggaggagaagattcttgcagctgcaaaatacaagctgaacgtggatcagaaagttatc
caggcgggcatgtttgatcagaagtcttcaagccatgagcggagggcattcctgcaggcc
atattggagcatgaagaggaaaatgaggaagaagatgaagtaccagacgatgagactctg
aaccaaatgattgcgagacgcgaggaagaatttgacctttttatgcgcatggacatggac
cggcggagagaagatgctcgcaacccaaagcgtaagccgcgcctgatggaggaagatgag
ctgccctcttggattatcaaggatgacgcagaggtagaaaggctcacgtgtgaagaggag
gaggagaagatattcggcaggggctctcgccagcgccgggatgtggactacagcgatgcc
ctcacagagaagcagtggctcagggccatcgaagacggcaatttggaagaaatggaagag
gaagtacggcttaagaaaagaaaaaggcgaagaaatgttgacaaagatcctgtgaaggaa
gatgtggaaaaagctaagaagagaagaggccgccctccagctgagaaactctcaccaaat
ccgcccaaactgacaaaacagatgaatgctatcatcgatactgtgataaactacaaagac
aggtgtaacgtggagaaggtgcccagtaattctcagttggaaatagaaggaaacagttcg
gggcgacagctcagtgaagtcttcattcagttaccttccaggaaagagttaccagagtac
tatgaattaattaggaagccagtggacttcaaaaaaatcaaggagagaattcgtaatcat
aagtaccggagcctgggggacctggagaaggatgtcatgctcctctgtcacaacgcacag
actttcaacttagagggctcccagatctacgaagattccatcgtcttacagtcggtgttt
aaaagtgctcggcagaaaattgccaaagaggaagagagtgaggatgaaagcaatgaggaa
gaggaagaagaggaggaggaggagtccgagtcagaggcaaaatctgttaaggtgaagatc
aagcttaataaaaaagacgagaaaggtcgagacaaaggaaaaggcaagaaaaggccaaac
cgagggaaagccaaacctgtggtgagcgacttcgacagtgacgaagagcaggatgagaac
gaacagtcagaagcaagtgggactgacgatgagtga
DBGET
integrated database retrieval system
