Entry |
|
Symbol |
Sympk
|
Name |
(RefSeq) symplekin isoform X1
|
KO |
|
Organism |
dsp Dipodomys spectabilis (banner-tailed kangaroo rat)
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:dsp00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122125791 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
122125791 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:dsp03021]
122125791 (Sympk)
03019 Messenger RNA biogenesis [BR:dsp03019]
122125791 (Sympk)
Transcription machinery [BR:dsp03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122125791 (Sympk)
Messenger RNA biogenesis [BR:dsp03019]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122125791 (Sympk)
U7-dependent histone pre-mRNA processing factors
122125791 (Sympk)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
Unknown
|
AA seq |
1267 aa
MASTSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALKWMVKSRVINDLQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRVADSEVPRRQEQDISLERIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDADSTLKKM
KLEPNLGEDDEDKDLDPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSTLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDVQVEAMKLGAVKRILRAEKAVACSGAAQVRVKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGTLDKYEACLLRLLSGLQERPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLICKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPDAKEPQAGPLEEDDLEPLALAPAPAPRPPQDLMG
LRLAQEKALKRQLEEEQKLKPAAPAAAPARPGPPPASEEAVDFREEGPEGETPAIFISMD
DDSGLTEAALLDSSLDGSLPKEAAPGAPASKEEPRSPPSLGPAGDEAAKTPSPAAEEAGE
PETQGNS |
NT seq |
3804 nt +upstreamnt +downstreamnt
atggcgagcaccagcggggacagtgtcactcgccggagcgtggcatcccagtttttcacc
caggaggaagggccaggcattgatggcatgaccacctcagagagggtggtggatctcctg
aaccaggcagcgctgatcaccaatgactcaaagatcacagtgctcaaacaggtccaggag
ctgatcattaacaaagaccccacgctgctggacaacttcctggatgagatcatcgcgttc
caagcagacaagtcgatcgaagtgcgaaaatttgtcattggcttcatcgaggaggcatgc
aagcgagacatcgagttgctgctaaaactgatcgccaacctcaacatgctcctgcgagat
gagaacgtgaacgtggtgaagaaggccatcctcactatgacgcagctctacaaggtggcc
ctgaagtggatggtgaagtcccgggtgatcaacgatctccaggaggcctgctgggacatg
gtgtcggccatggctggggacatcattctgctcttagactctgacaacgatggcatccgc
acccatgccatcaagtttgtggagggccttatcgtcaccctgtcgcctcgtgtggctgac
tcagaggtaccccgacgccaggagcaagacatcagcctggaacgcatccctcgagaccac
ccctacatccagtacaatgtgctatgggaggagggcaaagcagccctggagcagctcctc
aagttcatggtgcacccagccatctcctccatcaacctgactacggctctgggctccctc
gccaatatcgcccgccagagacccatgttcatgtctgaagtgatccaggcctatgagact
ctgcacgccaacctgcccccaacactggccaaatctcaggtgagcagcgtgcgcaagaac
ctgaagctgcacttactgagtgtgctcaagcacccggcctccttggaattccaggcccag
atcaccactctgctggtggacctgggcacaccccaggcggagatcgcccgcaacatgccg
agtggcaaggacgcccgcaagcggccccgggatgatgccgattccacactcaagaagatg
aagctggagcccaacctaggggaagatgatgaggacaaggacttggatcctggcccgtca
gggacctcaaaggcctcagcccagatctcaggccagtcagacacagacattacagcagaa
tttctgcagcctctgctgacgcctgataatgtggctaatctggtcctcatcagcatggtg
tacctgcccgagaccatgcctgcctccttccaagccatctacacccctgtggagtccgcc
ggcaccgaggcccagatcaagcacttggctcgcctcatggccacacagatgacagctgca
gggctgggtccaggtgtggagcagaccaagcagtgcaaggaggagcccaaggaggaaaag
gtggtgaagccagagagtgtcctgatcaagaggcgcctgtcggctcagggccaggccatc
tcggtggtgggctctctgagctccatgtccacactggaggaggaggcaccccaggccaag
aggcggccggagcccatcatccctgtcacacagccccggctggcaggtgctggtgggcgc
aagaagatattccgtctgagcgatgtgctgaagcccctgacagatgtccaggtggaggcc
atgaagctgggtgctgtgaagcggattctgcgggccgagaaggcagtggcctgtagtgga
gcggcccaggtacgtgtcaagatcctggccagcctggtgacgcagtttgactcaggcctc
aaggccgaggtcctgtccttcatccttgaggatgtgcgggcccgcctggacctggccttt
gcctggctctaccaggagtacaatgcctacttagccgctggtgcctcaggcacactggac
aagtacgaggcctgcctactgcgcctgctctctggcctgcaggagagaccagaccagaag
gacgggatcttcaccaaggtggtgctggaggccccgctcatcactgagagcgccctggag
gtcattcgcaagtactgtgaggatgagagccgcacctacctgggcatgtccacgctgcgg
gacctgatctgcaagcgcccgtcccgccagttccagtacctgcatgtcctcctggacctc
agctcccatgagaaggacaaggtgcgctcccaggccctgctgttcatcaagcgcatgtac
gagaaggagcagctgcgcgagtacgtggagaaattcgccctcaactacctgcagcttttg
gttcatcccaaccccccatccgtgctgtttggagctgacaaggacacagaggtggctgcg
ccctggacggaggaaacggtgaagcagtgtctgtacctctacctggccctcctacctcag
aaccacaagctgatccacgagctggcggccgtgtacacagaggccatcgctgacatcaag
cgcacggtgctgagggtcatcgagcagccgatccgagggatgggcatgaattcgccggag
ctgctgctgctggtggagaactgccccaagggagcagagacgctggtcacacgctgcctg
cacagcctcactgataaagtgccaccctccccagagctggtgaagcgggttcgagacctc
taccacaagcggctgcctgatgtccgcttcctcatccctgtgctcaatggactggagaag
aaagaggtgatccaggccctgcctaagctcatcaagctcaaccccatcgtggtgaaggag
gtcttcaaccgcctgctgggcacccagcacggcgaaggaaactcagccctgtccccgctg
aaccctggagagctcctgattgcgctgcacaacattgactctgtgaagtgtgacatgaaa
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtcggaggtg
ctggctgtggtgatgcagcagctgatggagcagagcccgctgcccatgctgctcatgagg
accgtcatccagtccctcaccatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccgcctcatcatgaagcaggtgtggaagtacccgaaggtgtgggagggcttcatcaag
tgctgccagcgcacgaagccgcagagcttccaggtcatcctgcagctgccgccgcagcag
ctgggcgccgtcttcgacaagtgccccgagctccgcgagccgctgctggcgcacgtgcgt
tccttcaccccgcaccagcaagcacacatccccaactccatcatgaccatcttggaggcc
agcggcaagcaggagcccgacgccaaggagcctcaggccgggcccctggaggaggacgac
ctggaacctctggctctggcccccgccccggccccccggcccccccaggacctcatgggc
ctgcggctggctcaggagaaggccctgaagcggcagctggaagaggagcagaaactgaag
cccgccgcgcccgccgcggcccccgccaggcccgggcccccgcccgcctccgaggaggcc
gtggacttccgggaggaggggcccgagggcgagaccccggccatcttcatcagcatggac
gacgactcggggctgactgaggctgcgctcctggactccagcctcgacggctccctgccc
aaggaggcagcccccggagcgcccgcctccaaggaggagccacggagcccgccaagcctc
ggccccgcgggggacgaagccgccaagacccccagcccggccgcagaggaggcgggggag
ccggagacccaggggaacagctga |