KEGG   Dipodomys spectabilis (banner-tailed kangaroo rat): 122125791
Entry
122125791         CDS       T07891                                 
Symbol
Sympk
Name
(RefSeq) symplekin isoform X1
  KO
K06100  symplekin
Organism
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03015  mRNA surveillance pathway
dsp04530  Tight junction
Brite
KEGG Orthology (KO) [BR:dsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    122125791 (Sympk)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    122125791 (Sympk)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dsp03021]
    122125791 (Sympk)
   03019 Messenger RNA biogenesis [BR:dsp03019]
    122125791 (Sympk)
Transcription machinery [BR:dsp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     122125791 (Sympk)
Messenger RNA biogenesis [BR:dsp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     122125791 (Sympk)
    U7-dependent histone pre-mRNA processing factors
     122125791 (Sympk)
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N PDS5 Cnd1 Cohesin_HEAT
Other DBs
NCBI-GeneID: 122125791
NCBI-ProteinID: XP_042556330
LinkDB
Position
Unknown
AA seq 1267 aa
MASTSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALKWMVKSRVINDLQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRVADSEVPRRQEQDISLERIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDADSTLKKM
KLEPNLGEDDEDKDLDPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSTLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDVQVEAMKLGAVKRILRAEKAVACSGAAQVRVKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGTLDKYEACLLRLLSGLQERPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLICKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPDAKEPQAGPLEEDDLEPLALAPAPAPRPPQDLMG
LRLAQEKALKRQLEEEQKLKPAAPAAAPARPGPPPASEEAVDFREEGPEGETPAIFISMD
DDSGLTEAALLDSSLDGSLPKEAAPGAPASKEEPRSPPSLGPAGDEAAKTPSPAAEEAGE
PETQGNS
NT seq 3804 nt   +upstreamnt  +downstreamnt
atggcgagcaccagcggggacagtgtcactcgccggagcgtggcatcccagtttttcacc
caggaggaagggccaggcattgatggcatgaccacctcagagagggtggtggatctcctg
aaccaggcagcgctgatcaccaatgactcaaagatcacagtgctcaaacaggtccaggag
ctgatcattaacaaagaccccacgctgctggacaacttcctggatgagatcatcgcgttc
caagcagacaagtcgatcgaagtgcgaaaatttgtcattggcttcatcgaggaggcatgc
aagcgagacatcgagttgctgctaaaactgatcgccaacctcaacatgctcctgcgagat
gagaacgtgaacgtggtgaagaaggccatcctcactatgacgcagctctacaaggtggcc
ctgaagtggatggtgaagtcccgggtgatcaacgatctccaggaggcctgctgggacatg
gtgtcggccatggctggggacatcattctgctcttagactctgacaacgatggcatccgc
acccatgccatcaagtttgtggagggccttatcgtcaccctgtcgcctcgtgtggctgac
tcagaggtaccccgacgccaggagcaagacatcagcctggaacgcatccctcgagaccac
ccctacatccagtacaatgtgctatgggaggagggcaaagcagccctggagcagctcctc
aagttcatggtgcacccagccatctcctccatcaacctgactacggctctgggctccctc
gccaatatcgcccgccagagacccatgttcatgtctgaagtgatccaggcctatgagact
ctgcacgccaacctgcccccaacactggccaaatctcaggtgagcagcgtgcgcaagaac
ctgaagctgcacttactgagtgtgctcaagcacccggcctccttggaattccaggcccag
atcaccactctgctggtggacctgggcacaccccaggcggagatcgcccgcaacatgccg
agtggcaaggacgcccgcaagcggccccgggatgatgccgattccacactcaagaagatg
aagctggagcccaacctaggggaagatgatgaggacaaggacttggatcctggcccgtca
gggacctcaaaggcctcagcccagatctcaggccagtcagacacagacattacagcagaa
tttctgcagcctctgctgacgcctgataatgtggctaatctggtcctcatcagcatggtg
tacctgcccgagaccatgcctgcctccttccaagccatctacacccctgtggagtccgcc
ggcaccgaggcccagatcaagcacttggctcgcctcatggccacacagatgacagctgca
gggctgggtccaggtgtggagcagaccaagcagtgcaaggaggagcccaaggaggaaaag
gtggtgaagccagagagtgtcctgatcaagaggcgcctgtcggctcagggccaggccatc
tcggtggtgggctctctgagctccatgtccacactggaggaggaggcaccccaggccaag
aggcggccggagcccatcatccctgtcacacagccccggctggcaggtgctggtgggcgc
aagaagatattccgtctgagcgatgtgctgaagcccctgacagatgtccaggtggaggcc
atgaagctgggtgctgtgaagcggattctgcgggccgagaaggcagtggcctgtagtgga
gcggcccaggtacgtgtcaagatcctggccagcctggtgacgcagtttgactcaggcctc
aaggccgaggtcctgtccttcatccttgaggatgtgcgggcccgcctggacctggccttt
gcctggctctaccaggagtacaatgcctacttagccgctggtgcctcaggcacactggac
aagtacgaggcctgcctactgcgcctgctctctggcctgcaggagagaccagaccagaag
gacgggatcttcaccaaggtggtgctggaggccccgctcatcactgagagcgccctggag
gtcattcgcaagtactgtgaggatgagagccgcacctacctgggcatgtccacgctgcgg
gacctgatctgcaagcgcccgtcccgccagttccagtacctgcatgtcctcctggacctc
agctcccatgagaaggacaaggtgcgctcccaggccctgctgttcatcaagcgcatgtac
gagaaggagcagctgcgcgagtacgtggagaaattcgccctcaactacctgcagcttttg
gttcatcccaaccccccatccgtgctgtttggagctgacaaggacacagaggtggctgcg
ccctggacggaggaaacggtgaagcagtgtctgtacctctacctggccctcctacctcag
aaccacaagctgatccacgagctggcggccgtgtacacagaggccatcgctgacatcaag
cgcacggtgctgagggtcatcgagcagccgatccgagggatgggcatgaattcgccggag
ctgctgctgctggtggagaactgccccaagggagcagagacgctggtcacacgctgcctg
cacagcctcactgataaagtgccaccctccccagagctggtgaagcgggttcgagacctc
taccacaagcggctgcctgatgtccgcttcctcatccctgtgctcaatggactggagaag
aaagaggtgatccaggccctgcctaagctcatcaagctcaaccccatcgtggtgaaggag
gtcttcaaccgcctgctgggcacccagcacggcgaaggaaactcagccctgtccccgctg
aaccctggagagctcctgattgcgctgcacaacattgactctgtgaagtgtgacatgaaa
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtcggaggtg
ctggctgtggtgatgcagcagctgatggagcagagcccgctgcccatgctgctcatgagg
accgtcatccagtccctcaccatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccgcctcatcatgaagcaggtgtggaagtacccgaaggtgtgggagggcttcatcaag
tgctgccagcgcacgaagccgcagagcttccaggtcatcctgcagctgccgccgcagcag
ctgggcgccgtcttcgacaagtgccccgagctccgcgagccgctgctggcgcacgtgcgt
tccttcaccccgcaccagcaagcacacatccccaactccatcatgaccatcttggaggcc
agcggcaagcaggagcccgacgccaaggagcctcaggccgggcccctggaggaggacgac
ctggaacctctggctctggcccccgccccggccccccggcccccccaggacctcatgggc
ctgcggctggctcaggagaaggccctgaagcggcagctggaagaggagcagaaactgaag
cccgccgcgcccgccgcggcccccgccaggcccgggcccccgcccgcctccgaggaggcc
gtggacttccgggaggaggggcccgagggcgagaccccggccatcttcatcagcatggac
gacgactcggggctgactgaggctgcgctcctggactccagcctcgacggctccctgccc
aaggaggcagcccccggagcgcccgcctccaaggaggagccacggagcccgccaagcctc
ggccccgcgggggacgaagccgccaagacccccagcccggccgcagaggaggcgggggag
ccggagacccaggggaacagctga

DBGET integrated database retrieval system