Dipodomys spectabilis (banner-tailed kangaroo rat): 122125791
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Entry
122125791 CDS
T07891
Symbol
Sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03015
mRNA surveillance pathway
dsp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122125791 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
122125791 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsp03021
]
122125791 (Sympk)
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122125791 (Sympk)
Transcription machinery [BR:
dsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122125791 (Sympk)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122125791 (Sympk)
U7-dependent histone pre-mRNA processing factors
122125791 (Sympk)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Motif
Other DBs
NCBI-GeneID:
122125791
NCBI-ProteinID:
XP_042556330
LinkDB
All DBs
Position
Unknown
AA seq
1267 aa
AA seq
DB search
MASTSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALKWMVKSRVINDLQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRVADSEVPRRQEQDISLERIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDADSTLKKM
KLEPNLGEDDEDKDLDPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSTLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDVQVEAMKLGAVKRILRAEKAVACSGAAQVRVKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGTLDKYEACLLRLLSGLQERPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLICKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPDAKEPQAGPLEEDDLEPLALAPAPAPRPPQDLMG
LRLAQEKALKRQLEEEQKLKPAAPAAAPARPGPPPASEEAVDFREEGPEGETPAIFISMD
DDSGLTEAALLDSSLDGSLPKEAAPGAPASKEEPRSPPSLGPAGDEAAKTPSPAAEEAGE
PETQGNS
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaccagcggggacagtgtcactcgccggagcgtggcatcccagtttttcacc
caggaggaagggccaggcattgatggcatgaccacctcagagagggtggtggatctcctg
aaccaggcagcgctgatcaccaatgactcaaagatcacagtgctcaaacaggtccaggag
ctgatcattaacaaagaccccacgctgctggacaacttcctggatgagatcatcgcgttc
caagcagacaagtcgatcgaagtgcgaaaatttgtcattggcttcatcgaggaggcatgc
aagcgagacatcgagttgctgctaaaactgatcgccaacctcaacatgctcctgcgagat
gagaacgtgaacgtggtgaagaaggccatcctcactatgacgcagctctacaaggtggcc
ctgaagtggatggtgaagtcccgggtgatcaacgatctccaggaggcctgctgggacatg
gtgtcggccatggctggggacatcattctgctcttagactctgacaacgatggcatccgc
acccatgccatcaagtttgtggagggccttatcgtcaccctgtcgcctcgtgtggctgac
tcagaggtaccccgacgccaggagcaagacatcagcctggaacgcatccctcgagaccac
ccctacatccagtacaatgtgctatgggaggagggcaaagcagccctggagcagctcctc
aagttcatggtgcacccagccatctcctccatcaacctgactacggctctgggctccctc
gccaatatcgcccgccagagacccatgttcatgtctgaagtgatccaggcctatgagact
ctgcacgccaacctgcccccaacactggccaaatctcaggtgagcagcgtgcgcaagaac
ctgaagctgcacttactgagtgtgctcaagcacccggcctccttggaattccaggcccag
atcaccactctgctggtggacctgggcacaccccaggcggagatcgcccgcaacatgccg
agtggcaaggacgcccgcaagcggccccgggatgatgccgattccacactcaagaagatg
aagctggagcccaacctaggggaagatgatgaggacaaggacttggatcctggcccgtca
gggacctcaaaggcctcagcccagatctcaggccagtcagacacagacattacagcagaa
tttctgcagcctctgctgacgcctgataatgtggctaatctggtcctcatcagcatggtg
tacctgcccgagaccatgcctgcctccttccaagccatctacacccctgtggagtccgcc
ggcaccgaggcccagatcaagcacttggctcgcctcatggccacacagatgacagctgca
gggctgggtccaggtgtggagcagaccaagcagtgcaaggaggagcccaaggaggaaaag
gtggtgaagccagagagtgtcctgatcaagaggcgcctgtcggctcagggccaggccatc
tcggtggtgggctctctgagctccatgtccacactggaggaggaggcaccccaggccaag
aggcggccggagcccatcatccctgtcacacagccccggctggcaggtgctggtgggcgc
aagaagatattccgtctgagcgatgtgctgaagcccctgacagatgtccaggtggaggcc
atgaagctgggtgctgtgaagcggattctgcgggccgagaaggcagtggcctgtagtgga
gcggcccaggtacgtgtcaagatcctggccagcctggtgacgcagtttgactcaggcctc
aaggccgaggtcctgtccttcatccttgaggatgtgcgggcccgcctggacctggccttt
gcctggctctaccaggagtacaatgcctacttagccgctggtgcctcaggcacactggac
aagtacgaggcctgcctactgcgcctgctctctggcctgcaggagagaccagaccagaag
gacgggatcttcaccaaggtggtgctggaggccccgctcatcactgagagcgccctggag
gtcattcgcaagtactgtgaggatgagagccgcacctacctgggcatgtccacgctgcgg
gacctgatctgcaagcgcccgtcccgccagttccagtacctgcatgtcctcctggacctc
agctcccatgagaaggacaaggtgcgctcccaggccctgctgttcatcaagcgcatgtac
gagaaggagcagctgcgcgagtacgtggagaaattcgccctcaactacctgcagcttttg
gttcatcccaaccccccatccgtgctgtttggagctgacaaggacacagaggtggctgcg
ccctggacggaggaaacggtgaagcagtgtctgtacctctacctggccctcctacctcag
aaccacaagctgatccacgagctggcggccgtgtacacagaggccatcgctgacatcaag
cgcacggtgctgagggtcatcgagcagccgatccgagggatgggcatgaattcgccggag
ctgctgctgctggtggagaactgccccaagggagcagagacgctggtcacacgctgcctg
cacagcctcactgataaagtgccaccctccccagagctggtgaagcgggttcgagacctc
taccacaagcggctgcctgatgtccgcttcctcatccctgtgctcaatggactggagaag
aaagaggtgatccaggccctgcctaagctcatcaagctcaaccccatcgtggtgaaggag
gtcttcaaccgcctgctgggcacccagcacggcgaaggaaactcagccctgtccccgctg
aaccctggagagctcctgattgcgctgcacaacattgactctgtgaagtgtgacatgaaa
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtcggaggtg
ctggctgtggtgatgcagcagctgatggagcagagcccgctgcccatgctgctcatgagg
accgtcatccagtccctcaccatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccgcctcatcatgaagcaggtgtggaagtacccgaaggtgtgggagggcttcatcaag
tgctgccagcgcacgaagccgcagagcttccaggtcatcctgcagctgccgccgcagcag
ctgggcgccgtcttcgacaagtgccccgagctccgcgagccgctgctggcgcacgtgcgt
tccttcaccccgcaccagcaagcacacatccccaactccatcatgaccatcttggaggcc
agcggcaagcaggagcccgacgccaaggagcctcaggccgggcccctggaggaggacgac
ctggaacctctggctctggcccccgccccggccccccggcccccccaggacctcatgggc
ctgcggctggctcaggagaaggccctgaagcggcagctggaagaggagcagaaactgaag
cccgccgcgcccgccgcggcccccgccaggcccgggcccccgcccgcctccgaggaggcc
gtggacttccgggaggaggggcccgagggcgagaccccggccatcttcatcagcatggac
gacgactcggggctgactgaggctgcgctcctggactccagcctcgacggctccctgccc
aaggaggcagcccccggagcgcccgcctccaaggaggagccacggagcccgccaagcctc
ggccccgcgggggacgaagccgccaagacccccagcccggccgcagaggaggcgggggag
ccggagacccaggggaacagctga
DBGET
integrated database retrieval system
