Dipodomys spectabilis (banner-tailed kangaroo rat): 122126088
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Entry
122126088 CDS
T07891
Symbol
Ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dsp03000
]
122126088 (Ctcf)
03036 Chromosome and associated proteins [BR:
dsp03036
]
122126088 (Ctcf)
Transcription factors [BR:
dsp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122126088 (Ctcf)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
122126088 (Ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_ZN142
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
122126088
NCBI-ProteinID:
XP_042556573
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQM
VMMEQLDPTLLQMKTEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELPPQEDPSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKR
KMRSKKEDSSDSEENAEPDLDDNEDDEEPAVEIEPEPEPQPVTPAPPPAKKRRGRPPGRT
NQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEAQPAATDAPNGDLTPE
MILSMMDR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgaggcagtcgaagccattgtggaagagtctgaaactttcattaaaggaaag
gagagaaagacttaccagcgacgccgggaaggtggccaggaagaagatgcttgccaccta
ccccagaaccagacagatgggggtgaggtggtacaggatgtcaacagcagtgtacagatg
gtaatgatggaacagctggatcctacccttcttcaaatgaagactgaagtaatggagggt
acggtggctcccgaagcggaggctgcagtggacgatacacaaatcataaccttgcaagtt
gtaaatatggaggaacagcccattaatataggagagcttcagcttgttcaagtacctgtt
cctgtgactgtacctgttgctaccacttcggtagaagaacttcagggggcttatgaaaat
gaagtgtctaaagagggccttgcagaaagtgaacccatgatatgtcacacattacctttg
cctgaagggtttcaggtggtgaaagtgggggccaatggagaggtggagacactagagcaa
ggtgaacttccacctcaggaagatccaagctggcagaaagacccagactatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagcaaactgcgttacacagaggagggcaaagat
gtggatgtgtctgtctatgattttgaagaagagcagcaggaaggcctgctgtcagaagtt
aatgcagagaaagtggttggtaatatgaagcctcccaaaccaacaaaaattaaaaaaaaa
ggtgtaaagaagacattccagtgtgagctgtgcagttatacatgtccacggcgttcaaat
ttggatcgtcacatgaaaagccacactgatgaaagaccacataaatgccatctctgtggc
agggcatttagaacagtcaccctcctgaggaatcaccttaacacacacacaggtactcgt
cctcacaagtgcccagactgtgacatggcctttgtgaccagtggagaattagtgcggcat
cgtcgttacaaacatacccatgagaagccatttaagtgttccatgtgtgattatgccagt
gtagaagtcagcaaattaaaacgtcacattcgctctcatactggagagcgcccgttccag
tgcagtttgtgcagttatgccagcagggacacatacaagctgaaaagacatatgagaaca
cattcaggggaaaaaccttatgaatgttatatttgtcatgctcggtttacccaaagtggt
accatgaagatgcacattttacagaagcacacagaaaatgtggccaaatttcattgtccc
cactgtgacactgtcatagcccgaaaaagtgacttgggtgtccacttgcggaagcagcat
tcctatattgagcaaggcaagaaatgccgttactgcgatgctgtgtttcatgagcgttac
gccctcattcagcatcagaaatcacacaagaacgagaagcgctttaagtgtgaccagtgt
gattatgcttgtagacaggagaggcacatgatcatgcacaagcgcacccatactggggaa
aagccttacgcctgcagtcactgcgacaagaccttccgccagaaacagctcctcgatatg
catttcaagcgctaccatgaccctaacttcgtccctgcggcctttgtctgttctaagtgt
gggaaaacatttactcgtcggaataccatggcaagacatgctgataattgtgctggtcca
gatggtgtagaaggagaaaatggaggagaaacaaagaagagtaaacgtggaagaaaaaga
aagatgcgttctaaaaaagaagattcctctgatagtgaagaaaatgctgagccagatctg
gatgacaatgaggatgatgaggaacctgcggtagaaattgaaccagagccagagcctcaa
cctgtgaccccagccccaccacctgccaagaagcggagaggaagaccccctggcagaacc
aaccagcccaaacagaaccagccaacagccatcattcaggttgaagaccagaatacaggt
gcaattgagaacattatagttgaagtcaaaaaagagccagatgctgagcctgcagaaggg
gaggaagaggaggcccagccagctgccacagatgcccctaatggagacctcacacctgag
atgatcctcagcatgatggaccggtga
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