Dipodomys spectabilis (banner-tailed kangaroo rat): 122126143
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Entry
122126143 CDS
T07891
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122126143 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122126143 (Edc4)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122126143 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
122126143 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_HPS5
DUF445
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
122126143
NCBI-ProteinID:
XP_042556680
LinkDB
All DBs
Position
Unknown
AA seq
1401 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGTTAESQRPPSTYNGDLNGLLVPEPLSSGDRTS
TNKPGLRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGASLNQFRRIIWCPF
IPEESEDCCEESSPMVALLHEDRAEVWDLEMLRSSHNTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGAENSHGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFTFGESRPELSNEGLGSAAHGSQSDLRRIVELPAPADFLSLSNETKPKLMTPDAFMT
PTASLQQITTSPGSSSNSSSSSSSSLTAVSAVSSTSAVDPSLSSLPASRPPEELTLSPKL
QLDSSLTMSSSSLQTSPRSLLPGLLPGPADKLTPKGPGQVSTAASALSVELQEVEPLGLP
QASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAAEGLEPDSMASAASALHLLS
PRPRAGPELGSQLGLEGGPGDGDRHSTPSLLEAALTQEAATPDSQVWPTAPDITRETCST
LAESPRNGLQEKHKSLAFHRLPYHLLQQHDSQDTSAEQSDHDDEVASLASASGGFSAKIP
TPRLPAKDWKTKGSPRSSPKLKRKSKKDDGDSAVGSRLTEHHVVEPPEDWPALIWQQQRE
LAELRHSQEELLQRLCAQLEGLQSTVTGHVERALETRHEQEQRRLERALAEGQQRGGQLQ
EQLTQQMSQALSSAVAGRLERSIREEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEGS
MKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDS
FRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMVATVSSSVRAEV
QHQLHLAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLD
CQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLLS
LIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNS
LGKAARRLSLMLHGLVTPSLP
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcatctgcgggacatcctc
aagctggaccggccggcagggggcaccactgcagaaagccagaggccacctagtacctac
aatggggaccttaatgggctcctggttccagagcccctcagctcaggtgatcgtacgtca
acaaacaagcctggtttgcggaccatgccacccattaacctgcaggagaagcaggtcatc
tgcctctctggagatgacagctccacctgcattggaattttggccaaggaggtggagatt
gtggccagcagtgactctagcatttcaagcaaggcacgcgggagcaacaaggtgaaaatt
cagcctgtagctaaatatgactgggaacagaagtactactatggcaacctgattgctgta
tctaactccttcttggcatatgctattcgggctgccaacaatggttcagcaatggtgcga
gtgatcagtgtcagcacttcggagcggaccctgctcaagggtttcacaggcagtgtggct
gatctggcctttgcacacctcaactctcctcagctggcctgcttagatgaggcgggcaac
ctgtttgtatggcgcttagctctagttaatggcaaaattcaagaagagatcttagtccat
atccgacagccagagggtgcatcactaaaccaattccgtaggatcatctggtgccctttc
atccctgaggagagcgaggactgttgtgaggagagcagcccaatggtggcccttctgcat
gaagaccgggctgaggtatgggacctggaaatgctccgttctagccacaacacctggcct
gtggatgtcagccaaatcaagcaaggcttcattgtggtaaaaggccacagcacgtgccta
agtgaaggagccctctcccctgacgggactgtcctggctactgcaagtcatgatggatac
gtcaagttctggcagatttacattgaagggcaagatgagccaaggtgtctccatgagtgg
aaacctcatgatggacggcccctctcctgtctcctgttctgtgataaccataagaaacag
gaccctgaagtcccattctggaggttcctcattactggtgctgaccagaatcgggagctg
aagatgtggtgcacagtgtcgtggacctgtctgcagaccattcgtttctccccagatatc
ttcagttcagtgagtgtgccccccagccttaaggtttgcttggatctctcagcagaatac
cttattctcagtgatgtacaacggaaggttctctatgtgatggagctgctacagaatcag
gaggagggccgggcctgcttcagctccatctcggagttcctactcacccaccctgtgctg
agctttggcatccaggttgtgagtcgctgccgactacgacacactgaggtactgcctgct
gaggaagaaaatgacagcctaggagctgagaattcccatggagccggtgccgtggagtct
gcagctggtgtgctcatcaagcttttttgtgtacacactaaggcactgcaggatgtgcag
atccgcttccagccacagctaaaccctgatgtcgtggccccactccccacccacactgcc
catgaagactttacttttggagaatctcgacccgaactgagcaatgagggcctagggtca
gctgctcacggatctcagtctgacctccgacgcatagtggagctgcctgcacctgctgat
ttcctcagcctgagcaatgagaccaagcctaagttgatgacacctgatgccttcatgaca
cctactgcctccctgcagcagatcacaacatctcctggcagcagtagcaacagcagtagt
agcagcagcagctctctaacagctgtgtctgcggtgagcagcacctcagctgtggacccc
tcattgtccagtcttcctgccagcaggccacctgaggagctgaccttgagccccaagcta
cagctggatagcagtttgacaatgagcagcagcagcctgcagacaagccctcgaagcctc
ctgcctggcctgctcccaggcccagctgacaaactgactcccaaggggcctgggcaggta
tctactgctgcctctgcactgtccgtggagctgcaggaagtggagcccctagggctaccc
caggcctcccccagtcgcacccgctcccctgatgttatctcctcggcttctactgcccta
tcccaggacattccagagattgcatctgaggccctgtcccgtggctttggctcctctgct
gccgagggccttgagccagacagtatggcctcagctgcctcggcactacacctactgtcg
ccacggccccgggcagggccagagcttggttcccagcttggcctagaaggaggccctggg
gacggggatcgacatagtaccccttctctactggaggcagccttgacccaggaagctgcg
acccctgatagtcaggtctggcccacagcacctgacatcactcgtgagacctgtagcaca
ctggcagagagccctaggaatggtctccaggaaaagcacaaaagcctagctttccaccga
ctaccttatcacttgctgcagcaacatgacagccaggacaccagtgctgaacaaagtgac
catgatgatgaggtggccagtcttgcctctgcttctggaggcttcagcgccaaaattccc
actccacggctgcctgccaaggactggaaaaccaagggatcccctcggagctcacccaag
ctcaagaggaaaagcaagaaggatgacggggattcagctgtgggatcccggctcacggag
caccatgtggtagagccccctgaggactggccagcactaatttggcagcagcagagagag
ctggcggagctgcgacacagccaagaagagctgctgcagcgtctttgtgcccagcttgaa
ggtctgcagagcactgtcacaggccatgtagaacgtgcccttgagacccggcacgagcag
gaacagcggcgtctagagcgggcactggctgagggacagcagcgaggtgggcagcttcag
gagcagctgactcagcagatgtctcaagcactgtcctcagctgtggctgggcggctggag
cgcagtatacgggaggagatcaagaagacagtgcctccatgtgtctccaggagtctggag
cctgtggcaggacaactgagcaactcagtcgctactaagctcacagctgtggagggcagc
atgaaagagaatatctccaagttactcaagtccaagaacttgacagatgccattgcccga
gcagctgcagatacattacaggggccaatgcaggctgcttaccgtgaagccttccagagt
gtagtactgcctgccttcgagaagagctgccaggccatgttccagcagatcaatgatagc
tttcggctgggcacacaggaatatttgcagcaactagaaagccacatgaagagtcggaag
gcacgggaacaggaggccagggagcctgtgctggcccaacttcggggcctggtcagtaca
ctgcagagtgccaccgagcagatggtggccactgtgtccagcagtgttcgggctgaggtg
cagcaccaacttcatttggctgtgggcagtctacaggagtcaattttagcacaagtacaa
cgcattgttaagggtgaggtgagcgtggcactcaaagagcagcaggcaaccgtcacctcc
agcatcatgcaggccatgcgctcagctgctggtacacctgtcccctctgcccaccttgac
tgccaggctcagcaagcccatatcctgcagttgctgcagcagggccacctcaatcaggcc
ttccagcaggccctgacagctgctgacctgaacctggtgctctatgtgtgtgaaactgtg
gacccagcccaggtttttgggcaaccaccctgtccactctcccagcctgttctcctttcc
ctcatccagcagctggcatcagaccttggcactagaactgacctcaagctcagttacctg
gaagaggctgtgatgcacctggaccacagtgaccccatcactcgagaccatatgggctct
gtcatggcacaggtgcgccaaaagcttttccagttcctacaggcggagcctcacaactca
ctcggcaaagcagcccggcgtctcagcctgatgcttcatggccttgtgacccccagcctc
ccttag
DBGET
integrated database retrieval system
