Dipodomys spectabilis (banner-tailed kangaroo rat): 122126248
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Entry
122126248 CDS
T07891
Symbol
Utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122126248 (Utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dsp03009
]
122126248 (Utp4)
Ribosome biogenesis [BR:
dsp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122126248 (Utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_WDR5
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_RIG_2nd
WD40_Gbeta
Beta-prop_EML
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
EIF3I
Beta-prop_SPT8
Beta-prop_Aladin
NBCH_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_BBS7
Beta-prop_VPS8
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
PQQ_2
Frtz
Motif
Other DBs
NCBI-GeneID:
122126248
NCBI-ProteinID:
XP_042556862
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MGEFKVHRVRFFNYVPPGIRCVAYNNKSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
RATEALCWAGGQRLFSAGLNGEILEYDLQALNIKYAVDAFGGPIWSMTASPSGSQLLVGC
EDGSVKLFEITPDKIQFERNFDRQKSRILCLSWHPAGTHVAAGSIDYISVFDFKSGSTVR
KMIVDRQHLGVTKPKCIVWGVAFLSDGTVISVDSVGKVQLWDSATGTLVKSHLIANADVQ
SIAVAEQEDSFVVGTAEGTIFHFQLVSVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTAL
ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLISCSKKRQLLLFQFAHHLELWRL
GSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGGWIAYSTVSRFFLYRLKY
ERDNISLQRVSKMPAFLRSALQILFSEDSTKLFVASNQGSLHVIQLMEASFKHLHSFQPQ
SGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNLKNLELHCTVPAYNFPVTALAIAPNTNN
LVIAHSDQQIFEYSIPDKQYTEWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHD
AYMFCIIDKSLPLPNDKTVFYNPLPPTNESDVFRRRTVHAFKISKIYKPLLFMDLLDERT
LVAVERPLDDIIAQLPPPIKKKKFGT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaatttaaggtccatcgagttcgtttctttaattatgttccacctgggatccgc
tgtgtagcttacaataacaaatcaaacagattggctgtttcacgaacagatggcactgtg
gaaatttataacttgtcagcaaactactttcaggagaaatttttcccaggtcatgagtct
cgggctacagaagctctgtgttgggcaggaggacagcgactctttagtgctggactcaat
ggagaaattcttgagtatgatttacaggcattaaacatcaaatatgctgtggatgctttt
ggaggacctatttggagtatgactgccagccccagtggctctcagcttttggttggctgt
gaagatggatctgtaaaactatttgaaatcacaccagacaaaatccaatttgaaagaaat
tttgatcgtcagaaaagtcgcatcctgtgtctcagttggcatcctgctggtacccatgtt
gcagctggttccatagactacatcagtgtgtttgatttcaaatcagggagcactgttcgg
aagatgattgtagataggcaacacctgggtgtgactaagccgaagtgtattgtgtggggc
gtggccttcttgtctgatggcactgtcataagtgtggattcagttgggaaagtacagtta
tgggactctgctactgggacccttgtcaagagtcacctcattgcgaatgctgatgtgcag
tccattgccgttgctgaacaagaagacagtttcgtggtgggcacagccgagggcacaata
ttccattttcaactggtctctgtgacttccaacagcagtgagaagcaatgggtgcggacc
aaaccattccagcaccacactcacgacgtacgcaccgtggcccacagcccaacggccctg
atatctggaggcactgacacacacttggtaattcgtcctctcatggagaaggtagaagtt
aagaattatgatgctgctctccgaaaaatcacctttccccatcgacgtctcatttcctgt
tctaaaaagagacagcttctcctcttccaatttgctcatcatttggaactttggcgacta
ggatctaccgttgcaacaggcaagaatggagatacccttccactttccaaaaatgcagat
catttattgcacctcaagacaaagggccctgagaacattatttgcagttgcatctctccg
tgtggaggttggatagcctattcaacggtatctcgttttttcctctatcggttgaaatat
gaacgtgacaacataagcctccaaagggtttcaaaaatgccagcattccttagatctgcc
cttcagattttgttttctgaagattcaacaaagctctttgtggcatcaaatcaaggatct
ctgcatgtcattcaactgatggaagcaagctttaagcacctgcatagtttccagcctcaa
tcagggactgtagaggccatgtgtcttttggcagttagtccagatgggaattggctagct
gcatcaggtaccagtgctggagtccacgtgtacaatctgaagaatctagagcttcactgc
acagtgcctgcctacaattttccagtaactgctctagccattgcccccaataccaacaac
cttgttattgctcattctgaccaacagatatttgagtacagcatcccagacaaacagtac
acagaatggagccgaactgtccagaagcaggggtttcaccacctgtggctccaaagggat
actcccatcacacacatcagttttcatcccaagagaccaatgcacatcctcctccatgat
gcctacatgttctgcatcattgacaagtcgttgcctttgccaaatgataaaactgtgttc
tacaatcctcttcctcccacgaatgaatcagatgtattccggaggcgcacagtccatgcc
tttaaaatttctaagatatataagcccttactcttcatggatcttctggatgaaaggaca
cttgtggcagtagaacggcccctggatgacatcattgctcagctcccaccacccatcaaa
aagaagaaatttggaacttag
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