Dipodomys spectabilis (banner-tailed kangaroo rat): 122128398
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Entry
122128398 CDS
T07891
Symbol
Abca5
Name
(RefSeq) cholesterol transporter ABCA5 isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
122128398 (Abca5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dsp02000
]
122128398 (Abca5)
Transporters [BR:
dsp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
122128398 (Abca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_23
MMR_HSR1
DUF4162
Rad17
Motif
Other DBs
NCBI-GeneID:
122128398
NCBI-ProteinID:
XP_042558642
LinkDB
All DBs
Position
Unknown
AA seq
1642 aa
AA seq
DB search
MATAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYGE
VPDTELNPMDKSILSNLILGYTPVTNITSDIMQRVSTDHLQDVIITEEYENEKEMVASSH
FKSSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI
DAAIIQLKTNVSIWKELESTKAIIMGETAVIEIDTFPRGVILIYLVIAFSPFGYFLAIHI
VAEKEKKLKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMSVIATASSLFPQSSSFVIF
LLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLLIVLMESFPKSLVWLLS
PFCQCTFLIGIAQVMHLEDFNEGALFSNLTEGPYPLIITMIMLALNSIFYVLLAVYLDQV
IPGEFGLRRSSLYFLKPSYWSKSKRNYKELSEGNVNGNISFSEIVEPVSSEFVGKEAIRI
SGIQKTYRRKSENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI
YGYRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLL
DLDMQAIKDNQAKKLSGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLKYR
KASRVTVLSTHFMDEADILADRKAVISQGMLKCVGSSIFLKSKWGIGYRLSMYIDRYCAT
ESLSSLVRQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDIHSNLGVISYGVSMTT
LEDVFLKLEVEAEIDQADYSVFTQQPPEEEMDSKSFDEVEQSLLILSETKASLVNTMSLW
KQQVSTIAKFHFLNLKRESKSVRSVLLLLLIFFAVQIFMFLVHHSFKNAVVPIKLVPDLY
LLKPGEKHHKYKTSLLLQNSTDSDISDVINFFTYQDIMVTMFNDSDYVSAAPHSAALNVV
RSEKDYVFTAVFNSTMVYSLPVLMNIISNYYLYHLNVTETIQVWNTPFFQEITDIVFKIE
LYFQAALLGIIVTAMPPYFAMENAENHKIKAYTQLKLSGLLPSAYWIGQAIVDIPLFFVV
LILMLGSLFAFHHGLYFYAVKFLAVVFCLIGYVPSVILFTYIASFTFKKILNTKEFWSFI
YSVTALTCIVITEITFFMGYTVTAVFHYTFCIAIPIYPLLGCLISFIKVSWKTIPKHEKT
FNPWDRLLVAVIMPYLQCILWIFLLQYYEKKHGGRSIRQDPFFRTFSRKSKNKKFPDPPN
NEDEDEDVRAERLKVKELMSCQCCEEKPAIMVSNLHKEYDDKKDFLHSRKVKKVATRYIS
FCVKKGEILGLLGPNGAGKSTIINILVGDVEPTSGQVFLGDYTPDTTEDDNYIKCMGYCP
QINPLWPDITLQEHFEVYGAVKGMSASDMKEVISRITNALDIKEHLQKTIKKLPSGIKRK
LCFALSMLGNPSVTLLDEPSTGMDPKAKQHMWRAIRTAFKNKKRAAILTTHYMEEAEAVC
DRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDWIENIEIDRLQREIQYIFPNASRQ
ESFSSILAYKIPKEDVQSLSQCFSKLEEAKHTFAIEEYSFSQATLEQVFVELTKEQEEED
NNCGTLNSTLWWERTQEDRVVF
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcaattagggaggttggagtttggagacagaccagaacacttctactgaag
aactatctaattaaatgtaggactaaaaaaagtagtgttcaggaaattctttttccactg
ttttttttattttggttaatattaattagtatgatgcatccaaataagaaatatggagaa
gtgcctgatacagaacttaatcccatggacaagtctatcctttctaatcttattcttgga
tacactccagtaacaaatattacaagtgacatcatgcagagagtgtctacagatcacctt
caagatgtcataatcactgaggagtatgaaaatgagaaagaaatggtagcatcaagtcat
tttaaatccagcaactttgtaggtgtggtttttaaagactcaatgtcctatgagcttcgt
ttctttcctgatatgattccggtatcttccatttatatggattcaagagctggctgttca
aaatcatgtgaagctgctcagtactggtcctccgggtttacagttttacaggcatccatt
gatgctgccatcatacagttgaagaccaatgtttctatttggaaagagctggagtccact
aaagctattattatgggggaaactgctgttatagaaatagatacctttccccgaggagtc
attttaatatacctggttattgcattttcaccttttggttacttcttggcaattcatatt
gtagcagaaaaagaaaaaaagttaaaggaatttttaaagataatgggacttcatgacact
gccttttggctttcctgggtgcttctgtatacaagcttgattttccttatgtcccttcta
atgtcagtcattgcaacagcttcttcattatttcctcaaagtagcagctttgtaatattt
ctactctttttcttatatggattatcctctgtattttttgctttaatgctgacaccactt
tttaaaaaatcaaaacatgtgggaatagttgaattttttgtcactgtggcttttggattt
attgggcttttgatagtcctgatggaaagttttccaaagtcgttagtttggcttttaagt
ccattctgtcagtgtacttttttgattggtattgcacaggtcatgcatttagaagacttt
aatgaaggtgctttattttctaatttgactgaaggcccatatcctctaattattactatg
atcatgctagcacttaatagcattttctatgttcttctggctgtctatcttgatcaagtc
attccaggggaatttggcttaaggagatcatctttatattttctaaagccatcatattgg
tcaaagagcaaaagaaattataaagagttatcagaaggcaatgttaatggaaatatcagt
tttagtgaaatagttgagcctgtttcttcagaatttgtaggaaaagaagccataagaata
agtggtattcagaagacataccgaaggaaaagtgaaaatgttgaggccttgagaaatttg
tcatttgacatctatgaaggtcagatcactgcattacttggccatagtggaacaggaaag
agtacattgatgaatattctttgtggactatgcccgccttctgatgggtttgcatctata
tatggatacagagtctcagaaatagatgagatgtttgaagcaagaaaaatgattggcatt
tgtccacaattagatatacattttgatgttttgacagtagaagaaaatttatcaatcttg
gcttcaatcaaaggaataccagctaacaatataatacaagaagtacaaaaggttttatta
gatttagacatgcaggccatcaaagataaccaagctaaaaaattaagtggtggtcaaaaa
agaaaactgtctttaggaattgctgttcttgggaatccaaagatattgctgctagatgag
ccaacagctggaatggacccctgttctcgccatattgtttggaatcttttaaagtacaga
aaagccagccgagtgactgtgcttagcactcacttcatggatgaagctgacattcttgcg
gataggaaagctgtcatatcacaaggcatgttgaaatgtgttggctcttcaattttcctc
aaaagtaaatgggggatcggctatcgcctcagcatgtacatagacagatactgtgccact
gaatctctttcttcattggtcagacaacacatacctggagctactttattacagcagaat
gaccaacagcttgtatatagcttgcctttcaaagacatggacaaattttcaggtttattt
tctgctctagacattcattcaaatttgggtgttatttcttacggtgtttccatgacgact
ttagaagatgtattcttaaaactagaagttgaagcggagattgaccaagcagattacagt
gtatttacacagcagccaccagaggaagaaatggattcaaaatcttttgatgaagtggaa
cagagcttacttattctttctgaaaccaaagcttctctagtgaataccatgagtctttgg
aaacagcaggtgtctacaatagcaaagtttcatttccttaacttgaaacgtgaaagtaaa
tcagtgagatcagtgttacttctgcttttaatattttttgcagttcagatttttatgttt
ttggtacatcactcttttaaaaatgctgtggttcccatcaaacttgttccagacttatat
ttactaaagcctggagagaaacaccataagtacaaaacaagcctgcttcttcaaaattct
actgactcagatatcagtgatgttattaactttttcacataccaagacataatggtgaca
atgtttaacgacagtgactatgtatctgctgctccccatagtgcagctttaaatgtggtc
cgttcagaaaaggactatgttttcacagctgttttcaacagtactatggtttattcttta
ccagtattgatgaatattatcagtaactactacctttatcatttaaatgtgacagaaact
atccaggtttggaataccccattctttcaggaaattactgacatagtgtttaaaattgag
ctgtactttcaagcagctttgcttggaatcattgttactgcaatgcctccttactttgca
atggaaaatgcagagaatcataagatcaaagcttatacgcaacttaaactttcaggtctt
ttgccatctgcatattggattggacaagcaattgttgatatccctttattttttgttgtt
ctcattttgatgctaggaagcttatttgcatttcatcatggactatatttttatgctgta
aaatttcttgctgtggttttttgccttattggttatgttccatcagttattctattcact
tacattgcttcttttacctttaagaaaattttaaataccaaagaattttggtcatttatc
tattctgtgacagcattgacttgtattgtaatcactgaaataaccttcttcatgggatat
acagttacagctgtttttcattacactttttgtatagccattccaatctatccacttctg
ggttgcctcatttcttttataaaggtttcttggaagacaataccaaaacatgagaagact
ttcaatccatgggataggcttttagtagcagttataatgccttaccttcagtgtattctg
tggattttcctcctgcaatattatgagaaaaaacatggaggcagatcaataaggcaggat
ccctttttcaggacattttccagaaagtccaaaaacaagaagtttccagatcctccaaat
aatgaggatgaagatgaagatgttagagctgaaagactgaaggtcaaagaactgatgagt
tgccagtgctgtgaagagaagccagccatcatggttagcaatttgcataaagaatatgat
gacaagaaagatttcctgcattcaaggaaagtaaagaaagtggcaactagatacatctct
ttctgtgtgaaaaaaggagagatcttgggactgttaggtccaaatggtgcaggaaaaagc
acaattattaatattctagttggtgatgtcgagccaacttcaggccaggtatttctggga
gattatactccagacacaactgaagatgataattacattaagtgtatgggttactgtcct
caaataaacccattgtggccagatattacattgcaggaacattttgaagtttatggagct
gtgaaaggaatgagtgccagtgacatgaaagaagtaataagtcgaataacaaatgctctt
gatataaaagaacatcttcagaaaaccataaagaaactaccttcaggaattaagcgaaag
ttatgctttgctctaagcatgcttgggaatccttcagttactctgttagatgaaccatct
acaggcatggaccctaaagccaaacaacacatgtggcgagcaattcgaactgcttttaaa
aacaaaaaacgggctgctattctgaccacacattatatggaagaagcagaggctgtctgt
gaccgagtggctattatggtgtctgggcagttaagatgcattgggacagtacaacatcta
aagagtaaatttggaaaaggctactttttggaaattaaattaaaagactggatagaaaac
atagaaatagatcgtcttcaaagagaaattcaatatattttcccaaatgcaagccgtcag
gaaagtttttcctctattctggcatataaaattcctaaggaagatgttcagtctctttcg
caatgtttttctaaactggaagaagctaaacatacttttgccattgaagaatatagtttt
tctcaagcaacattggaacaggtttttgttgaactcaccaaagagcaagaggaagaagac
aataattgtggcactttaaatagcacactttggtgggaaagaacacaggaagacagagta
gtattttga
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integrated database retrieval system
