Dichomitus squalens: DICSQDRAFT_102813
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Entry
DICSQDRAFT_102813 CDS
T03133
Name
(RefSeq) hypothetical protein
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
dsq
Dichomitus squalens
Pathway
dsq04120
Ubiquitin mediated proteolysis
dsq04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
DICSQDRAFT_102813
04120 Ubiquitin mediated proteolysis
DICSQDRAFT_102813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dsq04121
]
DICSQDRAFT_102813
Enzymes [BR:
dsq01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
DICSQDRAFT_102813
Ubiquitin system [BR:
dsq04121
]
Ubiquitin ligases (E3)
U-box type E3
DICSQDRAFT_102813
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
18833407
NCBI-ProteinID:
XP_007364034
JGI:
102813
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
MTSDPQSDAERIRLKRLAKLGGPSASSTPAASTSTSPAPSHAPAPSNPPPKATPPTPTVQ
KRRVEPVVAAPSPVPHKKKAPAVATPVHLDLPSWEDETISKVFNVTLKKEVAEKSGYEMV
WLKSLAEELQGDGLSLELNSEVADRTLIARLELDPQAMSDDLEFLPVLASLPSQQTVLEY
LIGCWKRLNAARNAVLKRNYVPLQQQQALDVLDKLRDLIISYTGLSLQEPEMFPQPSVPG
KELGAAELVPSFMSLSALSGPYLSAGSSGALLDSAEIETFLQDIVRRFEPDNEIDLVLGP
VVTRICSHQSLAVGFATGDGWRSVISGLEALVSVKPIAAMITRLPEWNPEATSAPEFETR
SLLGPLLRLGVFHRDWPSISAAYFLNHETRPQGEITSAMASLRGTLKTLQSSLFQVFNTL
VRASADAREAVLQYFARAINLNRKRAGMQVDMLTVSSDSFIMNLQIILFQFCEPFMDAQY
SKMDRIDPAYYAHSSRIDLTEETRVNATNDEAEEWRKQNEATAAPPNFISDIFYLALAAN
HIGQMKLVNNIEELLRQHDDVRRHLEVLQSDQSWRGTPYQARTEAAINAGKAEQDKLYAA
QLAYETQLGDPELVFRSISFSNLVSTWLLRQVDPRQKHPNPTIDLPLPKDVPMAWRVLPE
YLVEDVIEYHLYVIRQSPKSLELSGRNEMLLWCLTFLTSTWYIKNPFLKAKIVEVLFLGC
WNWGEQRSVLTSLLNTHPVALQHLMPALMHFYIEVEQTGASSQFYDKFNSRRNIAYIFKT
IWNNQAHRDALKNESIHNQEKFVRFVNLMINDVTYLLDESLSELAKIHDIQMEMKDREAF
EAKPAQYRREREATLRQLERHASGYVQLGNSTVDLLKIFTGETKAPFMVPEIVDRLAAML
DYNLETLVGPRSRELIVKNPEKYKFNPKTLLSDIIQVYLNLSDQGDFARAVAADGRSYRK
ELFEQAADVLKRTSLKSPDEIEKLRLFVVKVEETKATLEAEEDLGEIPDEFLDPLMYTLM
RDPVTLPSSRAVVDRSTIKSHLLSDTKDPFNRMPLTLDDVIPNVELKQRIDAFLAERRNK
DTALDHPPEEIVHMDVSHE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgacatccgacccacaatctgacgcggagaggatccgcttgaagcgtttagctaaactc
gggggaccgtccgcgagctctaccccggccgcgtccacctctacctcccccgctccttcg
catgcgcctgcgccttcgaacccccctccaaaggctaccccgcctactcctactgtccag
aagaggcgggtggaacccgttgttgccgcgccgtcgcctgtgccgcataagaagaaagct
cccgcggtcgcgaccccagtgcacctcgatctacccagctgggaggacgagaccatctct
aaggtgttcaatgtaacgctgaagaaagaggttgcagagaagagcgggtatgaaatggtg
tggctcaagagtctcgctgaggagctgcagggcgatggcctatctttggagctgaactct
gaagtggcagaccgtacattgattgcacggctagagttggacccacaagccatgtcggat
gatcttgagtttctccctgtgcttgcttctctcccatcacaacagaccgtgctagagtac
ctgattggatgctggaaacggttgaatgcagctagaaatgccgtgcttaagaggaattat
gtaccactgcagcaacaacaagcactcgacgtcctcgacaaactccgcgacctcatcatc
agctataccggcctgagtctccaagagcccgaaatgttccctcaaccaagcgtcccgggc
aaagagcttggtgcagcggaacttgtcccgtcctttatgtcgctttcagcactgtcgggc
ccgtatctctcagcaggttcctccggtgcccttctcgactccgccgaaatcgagacgttc
cttcaggacattgtacggcgattcgagccagacaacgagattgacttggtccttggtccc
gtcgtcactcggatatgctctcaccaatctctggctgtcggctttgctactggggacggg
tggcgtagtgtgatcagcggcttggaggcgcttgtgagtgtcaagccaatcgctgcgatg
atcacaaggcttccagagtggaaccctgaagccacgtctgcgcccgagtttgagacgagg
agcttgctgggcccgctcctgaggttgggtgtcttccaccgagattggccgtcaatctcg
gccgcgtacttcctgaaccacgagacgcgtccccaaggagagatcacctcggctatggct
agtttacggggcactctcaagaccttgcagagctctctcttccaagtattcaacacgctg
gtgcgcgcatcggcggacgcgcgagaggcggtcctgcagtacttcgctcgtgccatcaac
cttaatcgcaagcgcgctggcatgcaggtggacatgctgacggtgtcgtccgactccttc
atcatgaatttgcagatcatcctcttccaattctgcgagcccttcatggatgcacagtat
agcaagatggacaggatcgaccctgcgtattacgcgcactcctcgcggatcgacctaacg
gaggaaacgcgcgtgaatgcaacgaatgatgaggctgaggaatggcgcaagcagaacgag
gcgacagctgcgccgcccaacttcatctcggatatcttctatctggccctggctgcaaac
catatcggacaaatgaagctcgtcaacaacatcgaagagctgctcaggcagcatgatgac
gtccgaaggcatctcgaggtcctccagagcgatcagtcttggagagggactccttatcag
gctcgtacggaggctgctatcaacgccggaaaggctgagcaagacaagttgtatgcggcc
caactggcgtacgagacacaactcggcgatcccgagcttgtgtttcggtctatcagcttt
tcaaaccttgtatcgacatggctcctgcggcaggttgatcctcgacagaagcatcccaat
cctaccatcgacttgccgctaccgaaggatgtcccaatggcgtggcgagtgctgcctgag
tacctcgtcgaggatgtcattgagtaccatctctacgtgattcggcaaagcccaaagagc
ctggagctgtcaggaagaaacgagatgctcctctggtgtctgacattcctgacctcgaca
tggtacatcaagaatcccttcctaaaggccaagattgtcgaggtcctgttcctcgggtgc
tggaattggggcgagcaacgcagtgtcctcaccagcctccttaacacgcatcctgtcgcg
ctccagcatctgatgcctgctctcatgcacttctacatcgaggtcgagcagactggcgcc
agctcccaattctacgataaattcaactcccggagaaacatcgcttacatcttcaagacg
atctggaataaccaagcgcatcgtgacgccttgaagaatgagtcgatccacaaccaggag
aagttcgtccgcttcgtcaatctaatgatcaatgacgttacatacctcctggacgagtcg
ctctccgagcttgccaagattcatgacatccagatggagatgaaggaccgggaagccttc
gaggcgaaacctgcccagtaccgtcgcgagcgcgaggctaccctccgccagctcgagcgg
cacgctagtgggtatgtccaactcggcaactcgaccgtagacctcctcaagatcttcacg
ggcgagacgaaggcgcccttcatggttcccgagatcgtcgacagactcgcggccatgttg
gactacaacctcgagacgctcgtggggccgcgctcgcgggagctgatcgtgaagaacccg
gagaagtacaagttcaacccgaaaacgctcctcagtgacattatccaggtgtatctcaac
ttgtccgaccaaggcgatttcgcgcgcgcggtagcggcagatgggcggagctaccggaag
gagctctttgagcaggctgcggatgtcctcaagcggacgtcgctgaagtctccggatgag
atcgagaagttgcgtttgtttgtcgtgaaggtcgaagagactaaggcgacgttggaggcg
gaggaggacctaggggagatcccagacgagtttctcgatcccctcatgtacactctcatg
cgggaccctgttaccctaccatcgtccagagctgtcgtcgacaggtccactatcaagtct
catctactctctgacaccaaagaccccttcaaccgtatgccgctgaccctggacgacgtc
atcccaaacgtcgagctcaagcagcgtatagacgcgttcctcgccgaaagacgtaacaag
gataccgccctcgaccacccgccagaggagatcgttcacatggatgtatcacacgagtag
DBGET
integrated database retrieval system
