Dichomitus squalens: DICSQDRAFT_103482
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Entry
DICSQDRAFT_103482 CDS
T03133
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
dsq
Dichomitus squalens
Pathway
dsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DICSQDRAFT_103482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsq03019
]
DICSQDRAFT_103482
Messenger RNA biogenesis [BR:
dsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DICSQDRAFT_103482
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
DICSQDRAFT_103482
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
18833443
NCBI-ProteinID:
XP_007364360
JGI:
103482
LinkDB
All DBs
Position
Unknown
AA seq
736 aa
AA seq
DB search
MAARKLQTEIDRTLKKVAEGVELFESIYDKMQASTSQQQKEKLEIDLKTQIKKLQRLRDQ
IKTWVANNDIKDKSALLDNRKLIETQMEKFKACEKEMKTKAFSKEGLTQSAKLDPKQQEK
VDTMSWVQSMIDELMVQAETAEAEIETLQGGGKKKKAGSAAAERLEGLERLNERRKWHIN
RLELILRLLDNGSLPTEKVVSVQDDVKYFVESNSDEDFEEYEGVYDDLNLEEEEEKFRMP
NDESDSEESEEASEDLPLRTPSKKHHDEESVASSNKRDSPVLKKAATTLQQRKQSIAAEP
PKPPPHANFAQQSVASMVKGPAPPPRNPPSGYAKVAAAAVAPSTSAQTSTSTVSTSTSQP
AVVPPTPSMSTATTSSSSIPLDQHSAVTSSPSLTHPSVTSPMLSSAASVSHQPEDSVFSA
HGSPALLDAVPSSIGGPAATSSPQRPIARKASPSSPTSLQPPGVPHPSQEQSSAPAPNGL
SQISTATVQAPAAPSPLPPSGQSFPGASAPAGASPMPHPAQQQPQPPQFPPGVPVNNSEH
AKLPQAPPGTRPDSAAASGLPSQMQQRANAFPGSLSDLVMSFENVKQKAPHRMSNLDQVH
KLLQGSYSSMPQPQDTEKPKYYVPRNPVQTPPYYPQVPHPLLSTPGIFSQLDVETLFYVF
YYHPGTYQQYLAAKELKRQSWRFHVKYLTWFQRHSEPQAITEEYEQGVYVYFDWEGSWCQ
RKKSDFRFEYRYLSED
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcgcaagctgcaaaccgaaattgaccggaccctgaaaaaggtcgcggaaggc
gtcgagctcttcgagagcatatacgacaagatgcaggcgtcgaccagtcaacagcagaaa
gagaaattggagattgacctcaagacccagatcaagaagcttcagcgattgcgggaccaa
atcaagacatgggtagcgaacaatgacatcaaggacaagtccgcgctgctggataaccgc
aagctaattgaaacgcaaatggagaagttcaaagcatgcgagaaggagatgaagacgaag
gcgttctcgaaagagggccttacgcagtctgccaagctcgatccgaaacagcaagagaag
gtcgacacgatgtcatgggtgcagtcgatgattgatgagctcatggtacaagcggagacg
gcggaggcagagattgagacgctgcagggcggagggaagaagaagaaggcggggagcgcg
gcagcagaacggttagaggggctggagaggttgaacgaacggcggaagtggcatatcaac
cgtcttgaactcatcctccggctgctggacaatggctctctgcccacagagaaggtcgtt
tccgtacaagacgacgtcaagtacttcgtcgaaagcaattcggatgaggatttcgaggag
tacgagggtgtctatgacgacctcaacctcgaagaggaggaggagaagttccggatgcca
aacgatgagagtgacagcgaggagtctgaagaagcaagtgaagacttgcctctgcggacg
ccttccaagaagcaccatgacgaggagagcgttgccagtagtaataagcgcgatagtccc
gtcttaaagaaggctgcgacgacattgcaacagcggaaacaatcaatagcagcagaacca
cccaagccaccaccacacgcgaatttcgctcaacaatctgtagcaagtatggtcaagggt
ccggcaccaccaccacggaatcccccatccggttatgcgaaggttgctgctgctgcagtc
gctccatcaacatcggcacaaacatcaacctctacggtatcaacatctacatcgcaacca
gcagtcgtaccaccaacaccgtcaatgtccacagcgacaacgtcatcgagctcaataccg
ctagatcagcattctgccgtcacatcgtcacccagcttaacgcatccttccgtcacaagc
ccgatgctctcgtctgctgcgtccgtatctcatcagcccgaagactctgtgttctctgct
catggctctcctgcgctccttgacgcggttcccagttcgatcggcggtcctgcagcaacg
tcttccccacagcgaccaatagcacggaaagcttcgccgtcttcaccgacttctctacaa
ccaccgggcgtaccgcatccctctcaagagcagtcgtctgcgcccgcgcccaacggcctc
tcgcaaatatcgacagcaacagtacaagcacctgcagcgccgtctcccctgcccccctca
gggcaatccttccctggcgcatcagctcctgcaggcgcctcacccatgcctcaccccgcc
cagcaacagccacagccgccacaattccctcctggcgtgccagtcaacaactcggagcac
gcgaagctgccccaggccccgcccggaactcgcccggactcggcggctgcctcgggtctc
ccttcacagatgcagcagcgcgcgaacgcgttccctggctcattgtctgatctggtgatg
tcattcgagaacgtgaagcagaaagcgccacaccggatgtcgaacctcgatcaggtgcac
aagctactgcagggtagctactcgagtatgccgcaaccccaggacacggaaaagccgaag
tactacgtacctcgaaaccctgtccagacacccccatactatcctcaggtgccacacccg
ctgctcagcactccgggaatcttctcgcaactggatgtcgagacgctcttctacgtgttc
tactaccaccctggcacgtaccaacagtaccttgctgcaaaagagctcaagcgtcaatcg
tggcgattccacgtgaagtacttgacgtggttccaacggcactccgagccgcaggcgatt
acggaagagtatgagcagggagtttacgtttacttcgactgggaaggctcgtggtgtcag
cgcaagaagagcgacttccggttcgagtaccgctacctctctgaggactaa
DBGET
integrated database retrieval system
