KEGG   Dichomitus squalens: DICSQDRAFT_113888
Entry
DICSQDRAFT_113888 CDS       T03133                                 
Name
(RefSeq) hypothetical protein
  KO
K13126  polyadenylate-binding protein
Organism
dsq  Dichomitus squalens
Pathway
dsq03015  mRNA surveillance pathway
dsq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    DICSQDRAFT_113888
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DICSQDRAFT_113888
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsq03019]
    DICSQDRAFT_113888
   03041 Spliceosome [BR:dsq03041]
    DICSQDRAFT_113888
Messenger RNA biogenesis [BR:dsq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     DICSQDRAFT_113888
   mRNA cycle factors
    Stress granule specific factors
     DICSQDRAFT_113888
Spliceosome [BR:dsq03041]
 Complex C
  Other components
   Complex C specific factors
    DICSQDRAFT_113888
SSDB
Motif
Pfam: RRM_1 MLLE RRM_10 PAM2 Nup35_RRM_2 YqzE
Other DBs
NCBI-GeneID: 18834130
NCBI-ProteinID: XP_007371460
JGI: 113888
UniProt: R7SJB7
LinkDB
Position
Unknown
AA seq 808 aa
MASEYSSPPPEPRHQPHPYLHEPLLYISNLPAFVRDEDLAVTFQTCAPFRPNIQRDGSNR
PLSGTIEFKYLEKAEKALATLQGRPIPNLPQNVPLVLSPYPSTTPPTPLPPPNASPRLVK
QLPLGYTDSQLYDLFRPFGALASVRTQAPFGKDTGVVEFWREEDAREAEDTMHCAEVEGQ
NIVVQVYQPRRAGAIASEFSPNAPSFIPTGSVFPYPAQYSPPRQSPYGGPRQQQPLFIHG
PGQQVQLAPLSGPGSTSHSGLIDPCNLFIKNLDTSIDSNGLFSHFRQFGQIVSARVMRNE
QGESRGFGFVSYQTPDQAAAAMNAMNGVTLGTKQLVVRLHEPKQLRQEKLAQRFGGHNGH
PRSSSGATSPTASEAGESYAGWPSPSSHPAVLGSPVMGHHDRPDNRARRSSGSFYHAALA
GTLNLPMRYDDLSALSPVVRKEVLSGELQRQIKGMDAVSSDELESVVQAIVGLSLSEVVQ
GIQDPAKLSEQVQAAKKSLNLSKGSSPAPPSPSPAASQDSRLLDIGPNATASAPDHPSTP
LSMPATLSTPPRTESPSGSLTTPQSERDRMFAAVSKLESSQVSDLTDLLMSLPKRERAMC
LFNVEVLRAKIADAKLVLEVDETEEQTPAVQTVPVPQTPQQRKVSAASFDSPHTPDLSSR
GPSAAASPTPATPSSQVHTIASLARLPASEIIKLVQSSSVTGLPLPKADPMVVKATDEFI
DSLQDKPINQQKQQLGDKLCAMSFLWYVCFANCVCRWRVVKAFGIKGAPKITIALLDQDD
LRPLAHLMNSYPSVLKEKALLVQAAQSK
NT seq 2427 nt   +upstreamnt  +downstreamnt
atggcttcggagtacagcagcccgcccccagaacctcgtcaccaaccccatccatatctc
cacgagcctttgctgtacatctccaacctcccggcgttcgtgagagacgaagatcttgcc
gtcacgttccagacatgcgcgccgttccggccgaacatacaacgagatgggtccaacaga
ccgttgtcggggacgatcgagttcaagtatctggagaaggcggagaaggcacttgcgacg
ctgcagggccgcccgatccccaatctaccccagaacgttcctcttgttctctctccgtat
ccttccaccacaccacccacacctcttcctccccctaatgcctctccacgacttgtgaag
caacttcctctaggatacactgactcacaactttacgaccttttccgtccgtttggagct
ctcgcctcggtgcgcacgcaagccccgtttggcaaagacaccggcgtggtcgagttctgg
agagaggaagacgctcgggaggcggaagacacgatgcattgtgccgaggtcgagggccag
aatatcgtcgtgcaagtatatcaaccccgccgtgctggggcgatcgcgagcgagttttct
ccgaacgctccgtcgttcatcccgaccggctctgtatttccataccccgctcagtattcc
ccgcctcggcaatcaccctatggtggaccgcgtcaacaacaacctctgtttatccatggc
cctggacagcaagtgcagttggccccgctctctggtcccggatccaccagccactctggg
ctcattgacccttgcaatctgttcatcaaaaacctcgacacctcgattgactccaacggg
cttttctcgcacttccgtcagtttggacaaattgtcagcgcccgtgtgatgcgtaatgag
caaggagagagccgtgggttcgggttcgtatcttaccagacccctgaccaagctgctgcg
gctatgaacgcgatgaacggcgtcacactcggtacgaaacagcttgtggtccgcctgcac
gagccgaagcagctccggcaagagaagctcgctcagcgtttcggcggccacaacgggcat
cctcggagcagcagcggtgcgacatctccgacggcaagcgaggcgggcgagagctacgct
gggtggcctagccccagcagccatcctgctgtccttgggtcacccgtcatgggacatcat
gatcggccagataaccgggctcgccgcagctctggtagcttttatcacgctgcactcgcc
ggcacgctcaatctgcctatgcgctatgacgacctctctgcgctatctccggtcgtccgg
aaagaggtgctctctggcgagctccagcggcagatcaagggcatggatgccgtttccagc
gacgagctcgagtcggtcgtgcaggctatcgtggggctgtcgctgagcgaggtcgtacag
ggcatccaggaccctgcgaagctgtccgagcaggtgcaggcggcgaagaagtcgctgaac
ctgtcgaaggggtcgtcgccagcgcctccttctccgtcccccgctgcctcccaggactca
cgcctcctcgatattggtccgaacgcgactgcctccgcgcccgatcatccctctacgccc
ctctccatgcctgcgacgctttccacacccccgaggaccgagtctccgtctggatcgctc
acgacgccccagtctgagcgcgatcgcatgtttgctgccgtctcgaagctcgagtcctcc
caagtctcagatctcaccgacctcctcatgtcgctgcccaagcgcgagcgcgccatgtgc
ctgttcaacgtagaggtgctccgcgccaagatcgcggacgcgaagctcgtcctagaagtt
gacgagaccgaggaacagacgcctgccgtacagaccgtccccgtcccgcagaccccgcag
cagcgcaaggtgtcggctgcgtcgttcgactcgcctcacaccccagatctgtcatctcgt
gggcctagcgcggcagcgagcccgacacccgcgactccgagctcgcaggtgcacacgatc
gcgtcgctagcgcgcctgccggcgtccgagatcatcaagctcgtgcaatcgtcgtcggtg
acgggcttgccgctgcccaaggcggacccgatggttgtgaaggcgacggacgaattcatc
gatagtttgcaggacaagccgatcaaccagcaaaagcaacagctgggtgataagctgtgc
gccatgtccttcttgtggtacgtatgttttgctaactgcgtatgtaggtggcgtgttgtc
aaggcctttggtatcaagggtgcgcccaaaatcacaatcgctctgttggatcaggacgac
cttcgtccgcttgcgcacctgatgaacagttacccgtcggtgcttaaggaaaaggctctc
cttgttcaagccgctcagtccaagtaa

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