Dichomitus squalens: DICSQDRAFT_139394
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Entry
DICSQDRAFT_139394 CDS
T03133
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dsq
Dichomitus squalens
Pathway
dsq03013
Nucleocytoplasmic transport
dsq03015
mRNA surveillance pathway
dsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DICSQDRAFT_139394
09122 Translation
03013 Nucleocytoplasmic transport
DICSQDRAFT_139394
03015 mRNA surveillance pathway
DICSQDRAFT_139394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsq03019
]
DICSQDRAFT_139394
03041 Spliceosome [BR:
dsq03041
]
DICSQDRAFT_139394
Enzymes [BR:
dsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DICSQDRAFT_139394
Messenger RNA biogenesis [BR:
dsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
DICSQDRAFT_139394
Spliceosome [BR:
dsq03041
]
Complex C
Other components
EJC/TREX
DICSQDRAFT_139394
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
DICSQDRAFT_139394
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18835843
NCBI-ProteinID:
XP_007368822
JGI:
139394
UniProt:
R7SQV0
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MSAHDNEELIDYEDEHDVVTNGPPAAAGNGSAVAAPAADGDGEKDKKNFSGIHSTGFRDF
LLKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPV
NGEVSVIVLCHTRELAFQIRNEYSRFAKYMPDVRVNTFFGGTPVVKDADLLRDKSKCPHI
VVATPGRLNALVRDKVLDASKIKHFILDECDKMLEQLDMRRDVQEIFRATPLHKQVMMFS
ATLAKEIRITCKKFMDHPLEIFVDDETKLTLHGLQQHYVKLEEVAKNRKLNELLDTLDFN
QVVIFVKSVARAIELDKLLVSCNFPSIAIHSGLAQEERISRYTAFKAFEKRILVATDIFG
RGIDVERVNIVINYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSESDQQVMAAIQSRFE
VAVPELPDHIDPASYMTS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccacgacaacgaagaactcatcgactacgaggacgagcacgacgtggtcacc
aacgggcccccagcggcggccggcaatggtagcgcagtcgcagctcctgcggctgacggc
gatggggagaaagataagaaaaacttctcgggcattcactcaacaggattcagggatttc
ctgttgaagcctgagctgctgcgtgcaatcagtgatctgggtttcgagcatccctctgaa
gtgcagcaggagtgtattccccaggcagtcctgggaatggacgtgctgtgccaggccaag
tctggtcatggaaagacggcggtgttcgtcctcgcgactctgcagcagctcgagccggtc
aacggcgaggtgtcggtcattgtcctgtgccacactcgcgagctcgcattccagatcagg
aacgagtactcgcgtttcgcgaagtacatgcccgatgtccgtgttaacacgttcttcggt
ggcacgcctgtggtgaaggatgccgacctgctccgcgataagagcaagtgcccgcatatc
gtggtcgccacccccggccgcctgaacgccctcgttagagacaaggtcctcgacgcctcg
aagatcaagcacttcatactggacgagtgcgacaaaatgctcgaacagcttgacatgcgt
cgcgatgtccaggagatcttccgggcgacgccgctacacaagcaagtcatgatgttctcc
gctaccctggccaaggagatccgtatcacttgcaaaaagttcatggatcatcctctcgaa
atcttcgtcgatgacgagaccaagcttacgctccacggtctccagcagcactacgtgaag
ctggaggaggtggccaagaatcggaagctgaacgagcttcttgacactcttgacttcaat
caggtcgtgatcttcgtcaagtctgttgcgcgtgcaatcgaactcgacaagctccttgta
tcatgcaatttccccagtatcgcgattcactccggcctcgctcaggaagagcgtatctca
cgatacactgccttcaaggcgtttgagaagcgtatccttgtcgcgaccgatatatttggt
cgtggcatcgatgtcgagcgtgtgaatattgtcatcaactacgactgccctcctgacgcc
gacagctacctgcatcgtgtcgggcgtgccggccgtttcggcacaaagggccttgccatc
accttcgtatcctcggaaagtgaccagcaggtgatggcggctatccagtcccgcttcgag
gtcgccgtacctgagcttccggatcacatcgatcccgccagctacatgacgtcgtaa
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