KEGG   Dichomitus squalens: DICSQDRAFT_147669
Entry
DICSQDRAFT_147669 CDS       T03133                                 
Name
(RefSeq) Sm-like ribonucleo protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
dsq  Dichomitus squalens
Pathway
dsq03018  RNA degradation
dsq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DICSQDRAFT_147669
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DICSQDRAFT_147669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsq03019]
    DICSQDRAFT_147669
   03041 Spliceosome [BR:dsq03041]
    DICSQDRAFT_147669
Messenger RNA biogenesis [BR:dsq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     DICSQDRAFT_147669
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     DICSQDRAFT_147669
Spliceosome [BR:dsq03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    DICSQDRAFT_147669
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 18836663
NCBI-ProteinID: XP_007366500
JGI: 147669
UniProt: R7SXM0
LinkDB
Position
Unknown
AA seq 132 aa
MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLRECY
IRGSTIKYLRVPDTLLDAVKEEQNRAREAGRSARGAHVSGAGQRGRGAPQRGRGMVRGGG
PARGGRGRGRGM
NT seq 399 nt   +upstreamnt  +downstreamnt
atgctgccactatcgctccttaatgccgcccaaaataaacccatgttggtcgagctcaag
aatggcgagacgttcaacggtcacctcgtcaattgcgataacttcatgaacatcaccctc
cgggaggtctaccaaaccagtgccgagggagacaagttctggaagctgagagagtgctat
attcgaggcagcacgattaagtacttgcgtgtaccagacaccctcttggacgctgtgaag
gaagagcaaaaccgggcaagagaagctggccgtagtgcccgaggggcacatgtcagcggt
gccggtcagagagggcgtggtgcgccacagcgaggccgtggtatggttcgtggtgggggc
cccgcgcgtggcggacgtggaaggggaaggggaatgtaa

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