Dichomitus squalens: DICSQDRAFT_151918
Help
Entry
DICSQDRAFT_151918 CDS
T03133
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
dsq
Dichomitus squalens
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsq03021
]
DICSQDRAFT_151918
03036 Chromosome and associated proteins [BR:
dsq03036
]
DICSQDRAFT_151918
Transcription machinery [BR:
dsq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
DICSQDRAFT_151918
Chromosome and associated proteins [BR:
dsq03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
DICSQDRAFT_151918
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HTH_44
HHH_7
SPT6_acidic
Spt6_S1
Tex_central_region
SH2
HHH_9
HHH_3
Motif
Other DBs
NCBI-GeneID:
18837074
NCBI-ProteinID:
XP_007361134
JGI:
151918
LinkDB
All DBs
Position
Unknown
AA seq
1568 aa
AA seq
DB search
MSSPTRDYEVTCQEEDDPMRGGGQEEEEEEGVVIAANDPSDDSSEEPEEDEEEERRIREG
FIVDEDEEEEGDDEEEERRKRRKRRKKRHHREDEEDALDEDDLELLEENTGANFSRRRIV
RRRPGQESASPPALSSSKHRNVIESDEEDLDDEDTFPRVQDIHNIWDDERGGGRDDDDDD
VDMDDMDNFIEYEDEEDGGIEAQKARKEHLKKRKAMRRAMGSRPELSGIDANAWDEIHEV
FGDGHEYDWALVDDEETGFEEEQVKPEMKYQDVFEPSEIKARMLTEDDDLIRAQDIPERM
QLATSALSLSATLSMHRTLTENDLDDAASWVITRLSSRKERDFFRGDGQFHSFLPQLVEA
ITCALRYLFVQEFEVPYIWMHKRDYISYFDANNPKLQVELLSLDDLWRVYTVGQKYRSLL
ERRAALDTLYARLGVSDEYFETEVRNRVETAEMAADSSEWLGMKYREQKKIKIDIQFHDD
DEQVDTRKHKMPSRVSAYELAKKSVVSKLAEGFGIRAHEVVLNFVSDHNTHFVEEQELNP
LAYAEQFADPDATRAQPAEELLARARMIIATELGKDPLLRQEIRTTFKGNALISVLPTER
GVAKIDEHHPYFNFKYLYNKNAAEMLQSAQFLNILAAEADHLVTVSITLRPDAKAAFERK
LNDAFASDSFSDTARAWNEERSRVVQETLDQHLLPVGVKWTREWIREEAEDYLARQCASV
LRDRIDVAPYVGPSMRKGDTPSVMAVSWGKGDPHKDTISIVFLDEAGRLREHTKLDNLFG
VENQDEFCDMIKRRRPDVIAVAGFSIATLKLSRRIKELLSATQNDASGNGWGESNAPNPN
DSPSTPVIYVHDEVARIYQHSRRADEEFSALSPLSKYCVGLARYVQSPLNEYAALGADIT
AITFDEDYQQLVPREKLLTAMERVLVDVVNKVGVDINRAVTDSYYQHLLQFVAGLGPRKA
QVLVKKIASMGGNLINRGQFVKNGLLTTKIFLNASAFLRIVQDSEPKPAKNRHGEEIDVP
DPLDSTRVHPEDYELGRKMATDALELDEEDIHDEHPSHVVSVIMQDDDNEKKLDELNLDD
FAVNMYRTNQDKKRHTLNVIREELLRPYGEKRRGFVLPTNWEVVTMLTGETPRTLRTGLI
VSVQAVRVKDNFVIVRLDSGIEGTINKRYLTELGLPPPSVVKQGQTLSGVVMEVKLDIPA
DQVTVELSALEADVSGGDSQFRRVKQDDAWNHHQYEKDSEMQARKKRAEVDRTRRVIKHP
NFHNFNSQQAEQYLEKQQRGDVVIRPSSKGANHLAVTWKVDDKLYQHLDVVELNADPTGQ
TVGSKLIVDGTHQFSDLDELIVNHVQAMARKVEELMMHEKFKPGTEDDLHLFLRNFVAAN
PSKSAYGFTLNRKRPGHFNLCYLANKNSTVQTWPVRVTPAAYYLFDTPAAGVPELCDAFK
VRQKSMSLSSLAGASGGKTPFGARTPGRTPAPGHATPGHMSVRQVGRTPNPYGAPGGPPG
AAIPAGGFTPAFGGYPAGQQYGAGFQTPGYQQTSVSGFGQPPPPGSGATGMHPARAAMIQ
GNGWPAPY
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgcccactcgcgactacgaagtgacttgtcaggaggaagacgaccccatgcgg
ggcggtggtcaagaggaggaagaggaagaaggtgttgtgattgctgcaaacgacccttca
gatgacagttccgaggaaccagaagaagacgaggaggaagagaggaggattcgggaaggc
ttcattgttgacgaggacgaagaagaagagggagatgacgaggaggaggagaggcgtaag
aggcggaagcgtcgcaagaagcgtcaccatcgtgaagatgaggaagatgcgcttgatgag
gacgacctggagctattggaggagaacacgggcgcgaacttctctcgcaggcgaattgtc
cgcaggcgccccggtcaggaatccgcgtctcctcccgccctttctagttccaagcatagg
aatgtcatcgagtcagacgaagaagaccttgatgacgaagacaccttccctcgagtccaa
gacattcacaatatttgggatgacgagaggggcggtggtagggatgacgacgacgacgac
gtcgacatggacgacatggataacttcatcgagtacgaggacgaagaggatggagggatc
gaggcgcaaaaggcgcgaaaggagcacctgaagaaacggaaggcaatgaggcgggcgatg
ggttctcgtcccgaactctccggcatcgacgcgaatgcatgggatgaaatacacgaagtc
ttcggtgacggccatgaatatgactgggcgttggtggatgacgaggagacgggcttcgaa
gaagaacaggtgaagccggagatgaagtaccaggatgtgtttgaaccatccgagatcaaa
gcacgcatgctcacggaggatgacgacctcatcagggcccaagacattccagagcgcatg
cagctcgcgacgtctgctctgtccctgtccgcgaccttgtccatgcacaggacgttgacc
gagaacgacctcgatgacgccgcatcttgggtgatcactcgcctctccagccgcaaggag
cgagatttcttccgcggcgatggccagttccacagtttcctccctcagctcgtcgaagcc
attacctgtgccctccggtatctattcgttcaggagttcgaagttccctacatctggatg
cacaagcgggactacatctcatatttcgatgccaacaatcccaagctgcaggtcgagttg
ctttcgctggatgacctgtggcgggtctacactgtcggtcagaagtaccgctccctactg
gaaagacgagccgccttggacaccttgtacgctcgcctcggtgtttccgacgaatacttc
gagaccgaggtacgaaaccgagtggagacagctgagatggccgccgactcttctgaatgg
cttgggatgaagtaccgcgagcaaaagaagatcaagatcgatatccagttccacgacgac
gacgagcaagtagatactcgcaaacacaagatgccgagtcgcgtatccgcttacgaacta
gcaaagaagagtgttgtctccaaactcgccgagggtttcggcatacgagctcacgaagtc
gtcctaaacttcgtttcggaccacaatactcacttcgtcgaagaacaagagctgaatcct
cttgcatatgctgagcagttcgccgatcccgatgctacgcgtgcgcagccagccgaggag
ctgcttgcccgcgcgcggatgatcatcgcgaccgagctcgggaaggatcctctattgcgt
caagagatcaggaccacctttaagggcaacgccctcatctctgtacttcccacggaacgg
ggtgttgcgaagatcgacgaacaccacccgtacttcaacttcaaatacctctacaacaag
aatgcagctgagatgctccagtcggctcagttcctcaacattctcgcggctgaggcggac
cacctggtgacggtctctatcaccctccgtccagatgccaaggctgcattcgagcgcaag
ttgaatgacgctttcgcctcggacagcttcagtgacacagctcgggcgtggaatgaggag
cgctctcgggtggtacaagagacgctggatcagcatctactacccgtcggtgtgaagtgg
actcgagagtggattcgtgaggaagctgaagactatctagcacggcagtgcgcaagtgtt
ctccgggatcgtatcgatgttgcaccatacgttggcccctccatgcgtaagggggacact
ccgtctgtcatggctgtgtcgtggggtaagggcgatcctcacaaagataccatctctatc
gtctttctcgatgaggctgggcgattacgcgagcataccaagcttgacaatctgttcggt
gtcgagaaccaagacgagttctgtgatatgatcaagcgacggcggccggatgttatcgcg
gtcgcaggcttcagcatcgccacactgaagctgtcgcgacgcatcaaggagctgctaagt
gccacccagaatgacgcctctggcaatggttggggcgagtcgaacgcccctaaccccaac
gactcgcctagcacgccagtcatttatgtgcatgacgaggtcgctcgcatctatcagcac
agccgccgtgcggacgaggagttcagtgccctgtcgccgctcagtaaatactgcgttggt
ctggctcgatatgtgcagagcccgctcaatgagtatgccgcgctcggtgcggacatcacg
gctatcacattcgacgaggactaccagcaattggtgcccagagagaagctgctcacagcc
atggaacgtgtcctcgtcgatgtcgtcaacaaagtgggcgtggatatcaaccgcgccgtt
acggattcgtactatcaacatcttctccagtttgtcgccggtctcggtcctcggaaagct
caggtgttagtcaagaagattgcctccatgggcggcaacctgatcaaccgcggtcaattt
gtcaagaacggtcttctgaccacgaaaatattcttgaatgcttcggccttcctccgtatt
gtccaggactcggaaccgaagcccgcaaagaaccgccatggggaggagatcgatgtaccc
gaccccttggacagtacacgagttcatcccgaggactacgagcttggtcgcaagatggcc
accgatgcactcgaattggacgaggaggatatccacgacgagcacccatcacatgtcgtc
tctgtcatcatgcaggatgacgacaacgagaagaagcttgatgagctgaatctcgacgac
ttcgccgtcaacatgtatcggactaaccaagataagaagcggcacaccttgaacgtcatc
cgcgaagagctgctccgaccttacggggagaaacgcaggggcttcgttctccccaccaat
tgggaggtcgtcacaatgctcacgggagagacgccacgtacgctacgcacaggtctcatt
gtgtccgtacaggccgtacgagtcaaggataacttcgtcatcgtccgcctcgactctggt
atcgaggggactatcaacaagcgttacctcaccgaactcggcctccctcctcctagtgtc
gtcaagcaggggcagacgctctctggtgtcgtcatggaggtcaagctggatatacctgcg
gatcaagtgaccgtcgagctctccgctctcgaggcggatgtcagcggtggtgacagtcag
ttccgtcgcgtcaaacaagatgatgcatggaaccatcatcagtacgaaaaagacagcgag
atgcaagctcgcaagaagcgggccgaagtggatcgaacccggcgggtcatcaagcatcct
aacttccataacttcaactcgcaacaggcggagcagtacctcgagaagcagcagcgtggt
gatgtagtgatccggccgtcgtcgaaaggtgccaaccacctcgccgtaacatggaaggtg
gatgacaagctctaccagcacctcgatgtcgtcgagctcaacgccgatccgaccggtcaa
accgtgggctccaagctcattgttgatggcacacaccaattctctgatctggatgagttg
atcgtcaaccatgtccaagcgatggcgaggaaggtcgaggagctcatgatgcacgaaaag
ttcaaacctgggacggaagatgacttgcatctattcctgaggaacttcgtcgccgcgaac
ccctcgaagagtgcatatggcttcacgctcaatcgtaagcggcccgggcacttcaacctg
tgttacttggcaaacaaaaactcaactgtgcagacatggcccgtgcgagtaacgcccgcg
gcatactatcttttcgacacgcccgctgcgggtgtaccggagctctgtgacgccttcaaa
gtcaggcagaagtcaatgtcgctgagcagtcttgccggtgcatctggtgggaagacaccc
tttggcgctcgtactcccggcaggacacctgcaccaggacacgccacccctgggcatatg
tccgtacgccaggttggtcggacacccaatccttatggcgcccctggcggccctcctggc
gcagcgattcctgccggtggcttcactcctgcgttcggcggctaccctgcaggccagcag
tacggcgccgggttccagacacccggatatcagcaaactagtgtgtctggctttggccaa
cctcctccaccaggctctggcgccaccggaatgcatcctgcacgcgctgccatgatccag
ggcaatggctggccagcaccatactga
DBGET
integrated database retrieval system
