Dichomitus squalens: DICSQDRAFT_152971
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Entry
DICSQDRAFT_152971 CDS
T03133
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dsq
Dichomitus squalens
Pathway
dsq03420
Nucleotide excision repair
dsq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DICSQDRAFT_152971
03430 Mismatch repair
DICSQDRAFT_152971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsq03400
]
DICSQDRAFT_152971
Enzymes [BR:
dsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DICSQDRAFT_152971
DNA repair and recombination proteins [BR:
dsq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DICSQDRAFT_152971
MMR (mismatch excision repair)
Other MMR factors
DICSQDRAFT_152971
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
AAA_12
ADDB_N
Motif
Other DBs
NCBI-GeneID:
18837210
NCBI-ProteinID:
XP_007362552
JGI:
152971
LinkDB
All DBs
Position
Unknown
AA seq
1156 aa
AA seq
DB search
MADNINELLKELNPAQLQAVQHPPQIPLQILAGPGSGKTKVLTMRIAHLITNCYHPPWSI
CAVTFTNKAANEMRERLVKLVGKDNTAQIRMGTFHALCCNFLRRYARYVGIEGNFTVCDA
DESKKIVAKLLKPHQERLKGRNLTLKEATVLSMISKLKAKGMTADDALAKVAEANARPAE
ERIRRRMERGANDNANLLEGDLGEIIAAIYKEYEKTLREANSLDFDDLLVFGVRMFAGHK
KASAWCRHVLVDEYQDTNTTQYELMKHIAQVSKCVTIVGDPDQSIYGWRSAEITNLANMQ
RDFPNTQQIYLETNYRSTASILAASMAIISQDKNRIQKTLNTSHPKGPLPVLRAFPMEQV
EAGFIAAEIKRIIAFTGGMLTWSDFVVLLRYNAHSRVIEAALQKEGIPNRVLAGHKFFER
MEVKDVLAYLQLIDNPAFVPAFTRVVNVPSRTVGEKTVAELLHRASQLKLPPLTVVERIV
EGKIPDIKPPVKRKLSSFVDTLRDLRRYAHEGMSPTKLITALVDLVGYQEHLRKTQPDHE
SRWENVQELINFASEVENGMDAKAGRRMEDAAERAHEELWGDGLGEWDRDQVEEDGEGDT
PLRHFLQASMLSTDTETPEDEKSKDKVTISTCHAAKGLEWAVVMIPAVEDGVFPSARSED
TEEERRLLYVACTRAQGLLYLTHATSRMIAGEQKPTDLSPFIAEVRGDHQTRGVFSEELP
SLPGQDRTTICKVLGRPPPDETEVKRRVAEFTQTGRHPVWGMNAPFRDVPGVPHNGYAVP
ARYPGQQAQAGQQSWGGGGGGQRLGGVPGSIVEPDPDGLEAVLGTAGPVKRDPDGPQEPP
MFVASSILHFNNAHRAGIIQSAQQASTAAQLSNQAARAHAKLSSTPSSSRKGSANLQAPL
ASSSSRVVNTASSPASRGDIRDWFGQQDVDSQGLDLSSKAKGKARAAEAYLAMSSSKATP
TPAKPASRVPARPLGMTASVARVKMEKTEPTLVKTEHLEPSQLRLKREPSIEEPPLGLTQ
RVRPAGVQGKSISGRIKSERFDLELPSGRQPLVEATPASLARSSTFSPRSVPGTGRVVTV
KPPSTPSPFSSGQSLPSSSSASSSKSPSAAPVEIIDVDALDDPPVKPMTTKRRLGMGRAT
RGYANKKFKPLMPNGP
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaacatcaatgagctgctgaaggagctgaacccagctcaactccaggccgtc
cagcacccgccgcaaataccccttcagattctcgcaggaccgggaagcggaaagaccaag
gtgctcaccatgcgcattgcgcaccttatcacaaactgctaccacccaccatggtccatc
tgtgccgtcaccttcacgaacaaggccgcgaacgagatgcgcgagcggctcgtcaagctc
gtcggcaaggacaacacggcccagatcaggatggggaccttccacgccctctgctgcaac
ttcttgaggagatacgccagatacgtggggatcgaggggaacttcaccgtgtgtgatgcg
gacgagagcaagaagattgtcgcgaagctattgaagccacaccaggagcgactgaagggt
cgcaacctcactctcaaggaggctaccgtgctgtctatgatctcgaagctcaaggccaag
ggtatgactgccgacgatgccctggcaaaggtcgcagaggctaacgcacgccctgcggag
gagcggataaggaggaggatggagcgcggtgctaatgacaatgctaatttgctggagggc
gatctcggggaaatcatcgcagccatatacaaagagtacgagaagacgcttcgggaagct
aacagccttgacttcgatgacttgctcgtgttcggggtcaggatgtttgccgggcacaag
aaggcgtcggcatggtgccgccatgtcttggtggacgaataccaggacaccaacaccaca
caatatgagctcatgaaacacatcgcacaggtgtcgaaatgcgtaaccatcgtaggagac
cctgaccagtccatctatggatggcgatccgcagagatcacgaatctagctaacatgcag
cgagactttccaaatacgcaacagatatacctcgagaccaactatcgctccaccgcgtca
atcctcgctgccagcatggccattatctcgcaagacaagaaccgcatacagaagacactc
aacacctcgcatcccaagggccccctcccagtcctccgcgcgttcccgatggagcaggtc
gaggccggcttcatcgccgcagagatcaagaggatcatcgccttcacggggggcatgctc
acctggagcgacttcgtcgtcttgttgcgctacaacgcgcactcgcgagtcatcgaggcc
gccttgcagaaggagggcatcccgaacagggtattggcagggcataagttcttcgagcgc
atggaggtcaaggacgttctcgcctacctccagctcatcgacaacccagcgttcgtcccc
gccttcacgagggttgtgaacgtcccctcgcggacagtcggcgagaagaccgtagccgag
ctgctccaccgcgcctctcagctcaagctcccgccgctcaccgtcgtcgagcgcatcgtc
gagggcaagatccccgacatcaagccgcccgtgaagcgcaagctctcctcgttcgtcgac
acgctccgcgacctccgccggtacgcgcacgagggcatgtcgcccacgaaactcatcacc
gcgctcgtcgacctggtgggctaccaggagcacctgcggaagacgcagccggatcacgag
agccgatgggagaacgtgcaggagctgatcaacttcgcgagcgaggtggagaacgggatg
gacgcgaaggcggggagaaggatggaggatgcggcggagagggcgcatgaggagctgtgg
ggggatgggttgggggagtgggatcgggaccaggttgaagaggacggcgagggggatacg
cctttgcggcatttcttgcaggcgtcgatgttgtcgacggataccgagacgccggaggat
gagaagagcaaggacaaagtgacgatatcgacgtgccatgcggcgaagggccttgagtgg
gccgtggtcatgatacctgctgtcgaggacggcgttttcccttcagcacgctcagaagac
acggaagaagaacgacggttgctctatgtggcatgcactcgagcgcagggtctattatac
ctgactcatgcgacgtcgcgcatgatcgccggcgagcagaagcccacggatttatccccc
ttcatcgccgaagtacgcggcgaccaccagacgagaggtgtcttttcagaggaactccct
tctctccctgggcaagaccggacgacgatctgcaaagtcctcggccgtccgcccccggac
gagaccgaggtcaagcggagagtggcagagtttacgcagacgggccgacatcctgtgtgg
gggatgaacgcccctttccgagacgtacctggcgtaccgcacaatggttatgccgtgccc
gcgcggtaccctggccagcaggcgcaagcgggacagcaatcttggggtggtggtggcggt
ggacagcgattgggaggagtccctggctctattgttgagcctgatcctgacggcttggaa
gctgtgctcggtacggctgggcccgtcaaacgagacccagatgggcctcaagaacctccg
atgttcgtagcgagcagcatcctccatttcaacaacgcacaccgcgcgggcatcatccag
agtgcacagcaggcatcgactgccgctcagctatcaaaccaagccgcgcgtgctcacgcg
aaactttcttctacaccgtccagcagccgcaagggcagcgcgaaccttcaggcacctctt
gcttcctccagcagccgggttgtgaatacggccagctcccccgcgtccagaggcgatatt
cgcgattggttcggacagcaagacgtcgactcgcagggcttggacctttcgtcgaaggcc
aaggggaaggcaagagcagccgaggcttatctagctatgtcatcttcgaaggctacgccg
acaccagccaaacctgcgtcgagggtacctgctcgtcctttaggcatgacggcgagtgta
gcccgtgtgaagatggagaagaccgagcctactctcgtcaagacagagcatctggaacct
agccagctgaggctgaagcgagaaccctcaatagaagagcctcctctaggtttaacgcaa
cgagtgaggcctgccggagtgcagggcaagtcaatttcaggacgtatcaagtctgaacga
ttcgaccttgagctcccgagcggacgacaacctctcgtggaggctacaccggcttccctc
gctcgctcctcaaccttctcgccacgttcggttccaggcacaggccgcgtagtcaccgtt
aaacctccgtctaccccatctcccttctcttctggccaatctctaccatcgtcaagctcc
gcttcgagcagcaagtccccgtccgcggcaccggtggagataatcgacgtagatgcccta
gatgatcctcccgtgaagccaatgacgacgaagcggcgacttgggatgggtcgtgcaaca
aggggctacgcgaacaagaagttcaagccacttatgccgaacggcccatga
DBGET
integrated database retrieval system
