Dichomitus squalens: DICSQDRAFT_164514
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Entry
DICSQDRAFT_164514 CDS
T03133
Name
(RefSeq) rhamnogalacturonan lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
dsq
Dichomitus squalens
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
DICSQDRAFT_164514
Enzymes [BR:
dsq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
DICSQDRAFT_164514
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Ortholog
Paralog
GFIT
Motif
Pfam:
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
18838343
NCBI-ProteinID:
XP_007360187
JGI:
164514
LinkDB
All DBs
Position
Unknown
AA seq
639 aa
AA seq
DB search
MAILRFLRSVILGLSLTAVSAVTVNETSTSFSFANDRITFNVVKSNGYIRNLLFDGISVL
GTLSGNAGQLYSDFPSNVFALTASPTTEIVQGQDYAGIVVTDNDTSTGSLVQRSWFLRDG
ETGLHSFIRLAYHNATGPSKGQLGEVRTMFRPHGGPWTTLVTNKEQWAPIPGAQAFAEEV
QVQDATWYLGLTPDDPYVQQESDYFTKYSFADNQTNKAHGLYGQDTNGTPIGAWWVVNQK
DTFFGGPFHDDLMVDGIIYNKQSTSHGGATSPNITNGFDRTFGPQFLYLNRGENQTLQDL
LADAEQYANPAWNAQFYDEIAPHVVGYVPTSQRGSLSAFLNVPHGAKNVIAILSANGVHF
QDSAVVYGAYQYWVTDVQNGVVNIDRVKAGTYRLTVVASGIFGDYVQDNIVVNPGRTTHV
KATWIPESAGTELWRIGVPDKSSGEFRNGFERDLTRPRQPEKYRIYWGAWDFPTEFPGGV
NYTVGKSVDSKDWNYIHWSQYGPTYTRNETVTDINRWTINFPIDPHTARKLTSRSVATFT
VQLAGAETTAGNTDADQGAWPDFPFNVYVNSQTDPLVWTIQHWDSSSCGARSAISCHLIS
NKFQFSGTLLQEGDNSLVLELPHAAAVYVQYDALRLELQ
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggctatcctgcgcttcctccgctccgtcatcttaggcctctccttgacggcagtcagt
gccgttactgtcaacgaaacatcgacctcgttcagttttgcgaatgatcgaattacattc
aacgtcgtcaagagcaatggttacattcggaacctcctctttgacggcatctccgtactc
ggaactctttccgggaacgcaggacagctttactcggacttcccgtcaaacgtattcgca
cttacggctagcccgaccacggagattgtccaagggcaggactacgcggggatcgtcgtc
acggacaacgacacctccacaggatccctagtacaacgctcatggttcctccgcgacgga
gaaactggcctccattcgttcatccgactggcataccacaacgccactggcccttcgaaa
ggtcagttgggcgaagtgaggacgatgttccggccgcacggcggcccttggacgacgctc
gtcacgaacaaggagcaatgggctcccatacctggagcacaggctttcgccgaagaagtg
caggttcaggatgccacgtggtacctggggctcacaccggacgatccatacgtccaacag
gagtctgactacttcaccaaatactcctttgccgacaaccagactaacaaggcccatggt
ctatacggtcaagatacgaacggcacacccattggtgcttggtgggtggtcaaccagaag
gatacgttcttcggaggtcctttccacgacgatttgatggtggacggcatcatttacaac
aagcagtctacaagccacggcggtgcaacctctccaaatatcacaaatggctttgacaga
accttcggtcctcagttcctgtacctgaaccgaggggagaatcagacattgcaagacctc
ttagcggacgcagagcaatacgccaacccggcttggaatgcgcagttttatgacgagatt
gcgccacacgtggtaggctacgtacccacctcccaacgtggctcactctccgcctttttg
aatgtcccgcatggagcaaagaatgtcatagccatcctgagtgccaacggcgtgcacttc
caggacagcgcagtggtgtatggcgcgtatcaatactgggttaccgacgttcagaatggc
gtcgtgaacatagatcgtgtgaaggctgggacctatcgccttacggtcgtggcaagtggt
atcttcggggactacgtccaagacaacatcgtcgtcaatcccggcagaaccactcatgtg
aaggcgacatggatccccgagtctgctggaactgagctgtggcgaattggggtgcctgac
aagagctcgggggagtttaggaacggctttgaacgggacttgacgcgccccaggcagcca
gagaagtacaggatctattggggcgcgtgggacttcccgaccgagttcccgggaggggtc
aactacactgttggtaagagtgtcgacagcaaggactggaattacattcactggtcgcag
tatggtccaacctacacgaggaatgaaaccgtcacagacatcaatcgctggacgatcaac
ttccctattgacccacacacagcgcgtaagcttaccagccgttccgtcgcgacgttcacg
gttcagctcgctggtgcggagaccaccgccgggaatacggacgctgatcaaggagcatgg
ccggacttccctttcaatgtatacgtgaacagccaaaccgacccactcgtatggaccatc
cagcattgggatagcagcagctgcggggcgcgatctgccatctcttgccacctgatctcc
aacaagtttcagttctctgggaccctcctccaggagggcgacaacagtctggtgttggag
cttcctcacgcggctgcagtgtatgttcaatacgatgccctgcgcctcgaactgcaataa
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