KEGG   Dichomitus squalens: DICSQDRAFT_167425
Entry
DICSQDRAFT_167425 CDS       T03133                                 
Name
(RefSeq) hypothetical protein
  KO
K06100  symplekin
Organism
dsq  Dichomitus squalens
Pathway
dsq03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    DICSQDRAFT_167425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dsq03021]
    DICSQDRAFT_167425
   03019 Messenger RNA biogenesis [BR:dsq03019]
    DICSQDRAFT_167425
Transcription machinery [BR:dsq03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     DICSQDRAFT_167425
Messenger RNA biogenesis [BR:dsq03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     DICSQDRAFT_167425
    U7-dependent histone pre-mRNA processing factors
     DICSQDRAFT_167425
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N
Other DBs
NCBI-GeneID: 18838684
NCBI-ProteinID: XP_007363061
JGI: 167425
LinkDB
Position
Unknown
AA seq 1197 aa
MSANAAPVDPLTQFSLALAAPADSKEQAELLSTLRESLENHPSLSILCSTLINTLSGTGD
SLMKTWVLNLLHFAICKSNLSAEARTQLADQSLEVLAGLLNDGNINTVKVVVQCFPTVYA
LLFRSLCVNRSNRKPWDILTQAKARILEFVWAPHVNAGLRISAVKFMQRVILVQTRGIND
PRLQNKDDPNLNMVPSDHPFISVQALEQEGLKLLEGVITTLYTSNNPDMLSAILNSWANL
IKRRPALVELVLSTLVQWTPVKLEGQPASVIRSAEKTIRILLTHISRTPQGHPFVGQIQS
ALAAQAARMEQAVAEEKARRAAAAEASKKRTTTATPVTEAPESKRPKLEHEPVPALGAGG
FDFSALPATLVTDLIVANLQAHTENALIGLVQAYRHKKATTSIPVPAVAEIPGLSSTPPP
SRGSTAEHVASVSAQRPPPSGPRADREKKAKSVTPPPPPAPVKIEEPVDPLKMDIDDEEM
EYEPDRLNLEISGEAEPIDEAEAALDHAMEEAELPITDFKLPPARELDADDREVLMRKAI
TRIREGAKELVAAEGALDASDPHHLRTTPADMWMLLLVRMVTRVSDPSIEQEANEDETKA
DDAVVKRSEIYDRQDRLRHALCEYIMADFSGRIRLATTWMNEEWYNDRIRRQQDRAWQPN
YETWLNQIVAAYQTHAEGKDRTFSRFLLDLPAVPQDVLNLLRESCVEPERRQMGFAALRE
FVSQRPSLRAEAMNMLLELTTHPDKITRGAAINTVKRWIPDVQPMADMIRDFALQLLRRL
QSRPKQAEEEKPEKPQTNGADHEENMEDGQLPQEDIIQTPYLPEQLELPAVNAQILQHVE
LLFALSTKVPEFLDEIFAAYGGMEETVQETVQQLITPLVRALGPTHGKLLTLLRTFPPGA
ESLALRVLTIFTETGRPSAQLVALVKSLVNERDLDARFLIPIIAEMDKADIVRHLPRIVS
ILNGTPEPKQLVRSVFSSIVTTPPETFGKVTSNLPRVRQSELLTPAELMVLLHESEREIG
LRSAIEAISICFSMTDIYRSEILGVVMNQLVDVPNLPTLFMRTVIQAVTTYRSLRGFVST
TLLSRLITKKIWTNPPLWEGFIRCAKLIAPQSFGALLQLPKEQLREVVEKQPTLKAELRE
HVMKKGTNKARVAGYLDIFGEDDSSTPAAAASPAPSAGESTPQPEPEPLLVEPAQSS
NT seq 3594 nt   +upstreamnt  +downstreamnt
atgtcagcaaatgctgctcctgtcgaccccctaacgcaattctcccttgcgctcgctgcg
ccagccgactcgaaggagcaggcagagctgctctcgacgctgcgcgagtcgctcgagaac
caccccagtctgtcgatattatgctcgacgctcatcaacacactgtcgggcacgggggat
tcgctcatgaagacgtgggtgctgaacctgctgcacttcgcgatatgcaagtcgaatttg
agtgccgaggcgcgcactcagctggcggaccaatcattggaggtcctggcggggttatta
aatgacgggaacatcaacaccgtgaaggtggttgtgcaatgtttcccgacggtgtatgcg
ttactatttcggtcattatgtgtgaaccggagtaatcgcaagccttgggacatcctcacg
caggcgaaggcgcgaatcctcgagtttgtctgggctccccatgtcaacgccggcctgagg
atatctgccgtcaagttcatgcagcgggtcatacttgtgcagacgcgtgggatcaatgac
cccaggctccaaaataaggacgatcccaacctgaatatggtgccctccgatcatcccttc
atatctgtgcaggctctggaacaggaaggtcttaagctcctcgaaggcgtcatcacgaca
ctgtacaccagcaacaatcccgacatgctttcagccatcttgaatagttgggccaacctc
atcaagcgacgtccagcacttgtcgaattggtcttgtccacactggttcaatggacgcct
gtcaagctcgaaggccaaccagcgtctgtcatccggagtgcggagaagaccattcgcatt
ctgctcacgcacatatctcggacgccgcagggccatccgtttgtgggacagatccaatcc
gcccttgctgctcaagcggcaaggatggaacaagctgtcgccgaggagaaggctcgtagg
gcggcggcagcagaggcctcgaaaaagcgtaccactacagcgactcccgtcactgaggcg
ccagaatccaagcggcccaagctggagcacgaacctgttcctgctctcggtgccggtggc
tttgacttcagcgcgctccctgcgactctcgtgaccgacttgattgtggccaacctgcaa
gcgcatacggaaaatgctctcatcggactcgttcaagcatacagacacaagaaggccacc
acatcgataccggtaccagcagtggccgagatacctggactatcctcgacgcctccgcca
tctcgtggatctaccgcggagcatgtagcctctgtcagcgcccagcgtccacccccttca
ggacctcgtgcagaccgtgaaaagaaggcgaagtctgtcacacctccgcctccaccagct
ccggtcaaaatcgaggaacctgtggatcctctcaaaatggacattgacgacgaagagatg
gagtatgagcctgacagactcaatctggagatatctggcgaggcagagcccatcgatgaa
gcagaagcagcgctagaccatgccatggaggaggcagagctgcctattaccgatttcaag
cttcctcccgcacgagagctcgacgcggacgaccgggaagttcttatgcgcaaggcaatc
actcgaatacgggaaggggccaaagagcttgtcgctgccgagggtgcactggatgcttca
gatccccaccaccttcggacgaccccagcggacatgtggatgctgcttctagtgcggatg
gtaacacgtgttagcgatccctccatcgaacaggaggcgaacgaggatgagacgaaggcg
gatgatgctgttgtcaagcggtccgaaatctacgatcggcaggatagactacggcatgca
ttgtgcgaatatatcatggccgacttttctggccgaatacgactcgcaacgacctggatg
aacgaggagtggtacaacgacaggatacgacgtcaacaagaccgggcctggcaaccgaat
tacgagacctggctgaatcaaatcgtagcggcctatcagacacacgcagaaggcaaggat
aggacattttctcgcttcctgcttgatttgccagccgtgccacaagatgtcctaaatcta
ctcagggaatcctgcgtcgaaccagaacggcgacagatgggctttgccgctttgcgagag
ttcgtgtcgcaacgaccgtcattacgagcagaagccatgaatatgctcctggaattgacg
acgcatcccgacaagatcactcgcggtgcagcgatcaacacagtcaagcgttggatcccc
gatgtccaacctatggcggatatgattcgtgatttcgccttgcagttgcttcgccgactc
caatctcgtccaaaacaagccgaagaagagaagcctgaaaagccccagacgaacggcgcc
gaccatgaagagaacatggaagatggccaacttccacaggaggatatcatccaaacgccg
tatctgccggagcagctcgagcttcccgcggtgaacgcgcagatcttgcagcatgtggag
ctactgttcgccctgtcgacgaaggttccggagtttttggacgagatatttgcggcgtac
ggagggatggaggagaccgttcaggagactgtccaacagttgatcacaccgttagtgcga
gcacttgggccaacacatgggaaactccttacgcttctacggacgtttcctcctggtgcg
gagtcgctggcgctgcgtgtgctcactatctttacggagacgggccgaccgagtgcacag
ctggtggcattggtcaagagtctcgtcaatgagcgcgacctcgatgcaagattccttatc
cccatcatcgctgagatggacaaggccgacattgtgcgacatctaccacgcatcgtatct
attctcaacgggacgccagaacccaagcagctcgtgcgttcagtgtttagttctatcgtc
accacgccaccagaaacgtttggtaaagtgacgtctaacctgccgcgtgtgcggcaaagc
gagctgctgacaccggcggagcttatggtactgctccatgagtcggaaagggagatcggg
ttgaggagcgccatagaggccatttcaatctgtttctccatgactgacatttaccgctct
gaaattcttggtgtcgtaatgaatcagcttgtggatgttccaaatcttcctacgctgttc
atgcggacggtgatccaagcggtgaccacataccgttcgttgcgcggttttgtatcgaca
acgctgctctcgcgcctgatcaccaagaagatatggacaaatcccccgctttgggaaggc
ttcattcgctgtgccaagctcatcgcgccgcaaagtttcggagcgctcctccagctaccc
aaggagcagctgcgcgaggttgtcgagaagcagcccaccctcaaggccgagttgcgtgag
cacgtcatgaagaagggcacgaacaaggcgcgtgtcgcaggctacctcgacatcttcggc
gaagacgattccagcacaccggccgccgccgcaagcccggcgccgtccgctggagagtcg
acgcctcaacccgagccagaacctctgcttgtggaacccgctcaaagctcataa

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