KEGG   Dichomitus squalens: DICSQDRAFT_175060
Entry
DICSQDRAFT_175060 CDS       T03133                                 
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
dsq  Dichomitus squalens
Pathway
dsq03020  RNA polymerase
dsq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DICSQDRAFT_175060
  09124 Replication and repair
   03420 Nucleotide excision repair
    DICSQDRAFT_175060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dsq03021]
    DICSQDRAFT_175060
   03019 Messenger RNA biogenesis [BR:dsq03019]
    DICSQDRAFT_175060
   03400 DNA repair and recombination proteins [BR:dsq03400]
    DICSQDRAFT_175060
Transcription machinery [BR:dsq03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     DICSQDRAFT_175060
Messenger RNA biogenesis [BR:dsq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     DICSQDRAFT_175060
DNA repair and recombination proteins [BR:dsq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      DICSQDRAFT_175060
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 18840086
NCBI-ProteinID: XP_007370993
JGI: 175060
UniProt: R7SJD1
LinkDB
Position
Unknown
AA seq 170 aa
MFFIKELSHTIHLHPSYFGPRMLQFLESKLYSDVEGTCSGEFGYIIAVVSILDIGKGMVM
PGSGQAEFVTRYRAIVFKPFKGQVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPELKFD
PNSNPPSFASEDQVIEKNTRVRLKIVGTRVDATEIFAIGTIKEDHLGVID
NT seq 513 nt   +upstreamnt  +downstreamnt
atgttcttcatcaaagaactttcacacacgattcacctccatccctcgtacttcggcccg
cggatgctgcagttcctcgagtcgaaactttactcggacgtcgaaggaacgtgttccggc
gaatttggatacatcatagctgtcgtatccattttggacatcgggaagggcatggtcatg
ccagggagcggacaagctgaattcgtaacgcgctaccgcgccatcgtgttcaagccgttc
aaggggcaagtggtagatggagtggtaaacaacgtgaacaagatgggctttttcgcggat
gtcggacccttgaccgtcttcgtgtcccaccaactcatccaccctgagttgaagttcgac
cccaactcaaacccaccatcattcgcgtcagaagaccaggttatagagaagaacactagg
gtgcgtctaaaaattgtcggtacgcgcgtcgacgctacggagattttcgccatcggcaca
atcaaggaagaccaccttggcgttatcgactaa

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